Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_K23
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.91 
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.6  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    26   6.4  
SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme...    26   6.4  

>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
 Frame = +1

Query: 28  AKTYKNHWHLIRSYSSSVNGSEYLHKTLNLCGASNATDINSLIEYLESAYVTLAMVNYPF 207
           A T+  ++ + +S   SV    Y H T +LCG  N      +   L+ A       N+P 
Sbjct: 44  ALTFCPYYFIEKSGKGSV---VYFHPTSDLCGYKNIVHGGFITTMLDEALAFGVFPNFPS 100

Query: 208 ASSFLTPLPAQPVA-VVCQYLNQNLANESLLEG 303
                  L    VA  +C +L + +   + +EG
Sbjct: 101 KMGVTVQLDTTYVAPALCSHLYKIVTKTTKVEG 133


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 472 RTYHFAPSXKQALPSLCTPESPSRLRPNFGNCPLLYNL 359
           R + F P+ KQA  S  TP++P   +  + + P  YNL
Sbjct: 30  RLHSFVPTSKQAALSDITPDTPPAFKTPYSSLP--YNL 65


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -2

Query: 439 ALPSLCTPESPSRL--RPNFGNCPLLYNLHIAWFSS 338
           + PSLC    P+ +   PN+  C   Y L+  W+SS
Sbjct: 363 SFPSLCRTCPPNAICPSPNYVECKPGYVLYEPWYSS 398


>SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme
           Spe2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 7   AGTFYXLAKTYKNHWHL 57
           +G  Y +  T KNHWHL
Sbjct: 159 SGCSYVVGPTNKNHWHL 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,102,548
Number of Sequences: 5004
Number of extensions: 61572
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)