Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_K23
(905 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289... 126 3e-29
06_03_0934 - 26073084-26073220,26073296-26073345,26073465-260736... 101 8e-22
11_01_0351 - 2623653-2623795,2623939-2623988,2624086-2624165,262... 74 1e-13
03_05_0838 + 28093752-28094011,28095238-28095508,28095640-280958... 34 0.14
11_01_0200 - 1566826-1566939,1567297-1567494 29 6.7
02_02_0086 - 6647510-6648877 29 6.7
05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351 28 8.9
>01_06_0837 -
32328191-32328369,32328682-32328731,32328844-32328923,
32329193-32329345,32329505-32329654,32329877-32330000,
32330086-32330198,32330287-32330420,32330566-32331232
Length = 549
Score = 126 bits (303), Expect = 3e-29
Identities = 74/229 (32%), Positives = 113/229 (49%), Gaps = 5/229 (2%)
Frame = +1
Query: 31 KTYKNHWHLIRSYSSSVNGSEYLHKTLNLCGASNATDINSLIEYLESAYVTLAMVNYPFA 210
+T K+ W + + + +G L KT +LC T L ++L SAY LAMV+YP
Sbjct: 275 QTIKDSWKALDAQGNGQDGLLKLSKTFHLCKTIKNT--GELSDWLSSAYSYLAMVDYPMP 332
Query: 211 SSFLTPLPAQPVAVVCQYLNQNLANESLLEGIAKAIDVYANYGKKTKQCVDYKEGDNYQN 390
+ F+ PLP P+ +C ++ S+LE I ++VY NY T C D D+
Sbjct: 333 ADFMMPLPGNPIKELCTKIDNQPDGTSILERIYAGVNVYYNY-TGTVDCFDL--NDDPHG 389
Query: 391 LDAGGWDFQACTEMVMPVCXTGQNDMFEASPWNFTKYSEDCYKKYNVYPRENXXRLQYGG 570
+D GWD+QACTEMVMP+ + ++ MF A +N+T Y +DC + V PR ++GG
Sbjct: 390 MD--GWDWQACTEMVMPMSYS-EDSMFPADKFNYTSYEKDCINSFGVEPRPQWITTEFGG 446
Query: 571 ---DLLXACFXYCLXLW--VVXPWTXGGFXXXXXXXXXXXXXXXAAHHL 702
L+ F + + ++ PW+ GG AHH+
Sbjct: 447 HNISLVLERFGSNIIFFNGLLDPWSGGGVLKNISESVVAIIAPLGAHHI 495
>06_03_0934 -
26073084-26073220,26073296-26073345,26073465-26073634,
26073651-26073803,26073877-26074032,26074227-26074350,
26075066-26075178,26076336-26076469,26077391-26077578,
26077718-26078139
Length = 548
Score = 101 bits (242), Expect = 8e-22
Identities = 59/180 (32%), Positives = 95/180 (52%), Gaps = 1/180 (0%)
Frame = +1
Query: 40 KNHWHLIRSYSSSVNGSEYLHKTLNLCGASNATDINSLIEYLESAYVTLAMVNYPFASSF 219
K W LI S+ G L KT C + S +L +A+V AMV+YP ++F
Sbjct: 259 KAAWDLIDERGSTDAGLLQLSKTFRAC--KTVKSVYSFRNWLWTAFVYTAMVDYPTPANF 316
Query: 220 LTPLPAQPVAVVCQYLNQNLANESLLEGIAKAIDVYANY-GKKTKQCVDYKEGDNYQNLD 396
L LPA P+ +C+ ++ A +++ A +Y NY G +T C ++G++ L
Sbjct: 317 LMNLPAYPIKEMCKIIHGFPAGADIVDKAFAAASLYYNYTGDQT--CFQLEDGEDPHGL- 373
Query: 397 AGGWDFQACTEMVMPVCXTGQNDMFEASPWNFTKYSEDCYKKYNVYPRENXXRLQYGGDL 576
GW +QACTEMVMP+ + ++ MF + + S+DC++ Y V PR + +YGG++
Sbjct: 374 -SGWGWQACTEMVMPMTISNES-MFPPFTFTYEGKSDDCFQSYGVRPRPHWITTEYGGNV 431
>11_01_0351 -
2623653-2623795,2623939-2623988,2624086-2624165,
2624262-2624585,2625164-2625281,2629019-2629062
Length = 252
Score = 74.1 bits (174), Expect = 1e-13
Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 3/162 (1%)
Frame = +1
Query: 94 YLHKTLNLCGASNATDINSLIEYLESAYVTLAMVNYPFASSFLTPLPAQPVAVVCQYLNQ 273
+L +L L + N DI L+E A + +M++YP S+FLT LPA PV +C+ +++
Sbjct: 5 HLVASLLLFFSGNVDDIPGLVE---KALIYGSMMDYPTPSNFLTSLPAYPVREICRAIDK 61
Query: 274 NLANESLLEGIAKAIDVYANY--GKKTKQCVDYKEGDNYQNLDAGGWDFQACTEMVMPVC 447
+ + I A+ +Y N G ++ D Y GW +QACTE++M +
Sbjct: 62 PTSGNDTVSRIKDAMTIYYNSTGGLACFPGAGAEDDDPYGMFP--GWTWQACTEVIMTMS 119
Query: 448 -XTGQNDMFEASPWNFTKYSEDCYKKYNVYPRENXXRLQYGG 570
G +F P+N T Y C V PR + + +GG
Sbjct: 120 YGIGNATVFPPDPFNLTAYLAGCLATTGVPPRPHWIQSYFGG 161
>03_05_0838 +
28093752-28094011,28095238-28095508,28095640-28095810,
28096238-28096369
Length = 277
Score = 34.3 bits (75), Expect = 0.14
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -3
Query: 540 AWIYIVFLVAIFRIFGKVPRRRFEHII-LPRRTNRHYHLCARLKVPAACVQILVIVPFFI 364
A + ++FLV IF +F PRR FE I+ LPR L L V A Q I+ +
Sbjct: 48 ASVLVLFLVGIFCVFRAAPRREFEQILRLPRSLADVRLLKDNLAVYARDYQANFILGYCS 107
Query: 363 IYTLL 349
IY +
Sbjct: 108 IYIFM 112
>11_01_0200 - 1566826-1566939,1567297-1567494
Length = 103
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 4 IAGTFYXLAKTYKNHWHLIRSYSSSVNGSEYLHKTLNLCGAS 129
+AG + L + +H L+ SY+ +V+ SE + K LN AS
Sbjct: 51 LAGDYTYLLASVHHHKDLLFSYNIAVDRSEEMKKILNKSAAS 92
>02_02_0086 - 6647510-6648877
Length = 455
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 186 SYGELSLCL*LSDAVTSAACGRGLSIFKSKFGKRI 290
S G S + D TS+ACG G+SI+ K +R+
Sbjct: 10 SNGHASSSSSMLDDDTSSACGGGMSIYYQKINQRV 44
>05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351
Length = 1007
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 16 FYXLAKTYKNHWHLIRSYSSSVNGSEYLHKTLNLCG 123
+Y +Y + WHL RSY+ + +G H L + G
Sbjct: 327 YYLKQLSYNDCWHLFRSYAFA-DGDSSAHPNLEMIG 361
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,365,718
Number of Sequences: 37544
Number of extensions: 428821
Number of successful extensions: 900
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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