Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_K21
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.3  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +2

Query: 239 QCSSCAKYCRPSDSSFENRRRAARSKPKVCSQCHQS 346
           QC  C+K     ++   +RR   + +P  C  C ++
Sbjct: 121 QCEYCSKSFSVKENLSVHRRIHTKERPYKCDVCERA 156



 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +2

Query: 239 QCSSCAKYCRPSDSSFENRRRAARSKPKVCSQC 337
           +C+ C+K    S     + R     KP VC  C
Sbjct: 177 KCTVCSKTFIQSGQLVIHMRTHTGEKPYVCKAC 209


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
 Frame = -3

Query: 276 SDGLQYLAHEEHCHLDTA---IAVPGQLVALYVLSGAVLAV--ACRSAG*TSGTK-PEQR 115
           + G+QYLA   + H D A   + V   LV      G    +  A   A  T G K P + 
Sbjct: 745 ASGMQYLAEMNYVHRDLAARNVLVNAALVCKIADFGLSREIESATEGAYTTRGGKIPVRW 804

Query: 114 TAPE 103
           TAPE
Sbjct: 805 TAPE 808


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 604 SKNXESSXNKDFGVRAYIH*NVIIYTYLIYFIVLFKNT 717
           S+  ES+      +  ++   ++I+TY+I  I L  +T
Sbjct: 394 SRTKESAWRHFAAIIEWLSFFIVIFTYIIILITLVPST 431


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 788  ISNNXVNRGTYIIWSLTPAT 729
            +SNN    G +++  L PAT
Sbjct: 1509 VSNNVKPGGNFVVLDLVPAT 1528


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,283
Number of Sequences: 438
Number of extensions: 5521
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)