Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_K20
         (853 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0785 + 6095041-6095135,6095455-6095760,6098458-6098554,609...    28   8.2  
01_06_1768 + 39771025-39771241,39771284-39771513,39772165-397722...    28   8.2  

>07_01_0785 +
           6095041-6095135,6095455-6095760,6098458-6098554,
           6098943-6098999,6099202-6099751,6099922-6100234,
           6100245-6100335,6101002-6101469
          Length = 658

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 179 KMKQLYAW-KQLGYDFNGTKYIKDADRIRSPGAIHFVQELGDSEKFFIQ--YNNVPTGIK 349
           ++++LY W +Q G + +G          R PGA    ++L ++E FF+     + P GI 
Sbjct: 75  QLRELYDWLQQAGENSSGGVQTSSTTASRRPGAALSPEDLTETEWFFLMSASYSFPPGIG 134

Query: 350 FVG 358
             G
Sbjct: 135 LPG 137


>01_06_1768 +
           39771025-39771241,39771284-39771513,39772165-39772245,
           39772468-39772824,39772942-39773046
          Length = 329

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 383 RRRFGIPSTLN-YIDRRHSKKLDPLLKPYPNPEAVSSLTS 499
           RRR GIP+ +  ++ RRH+  L   L P    + +S + S
Sbjct: 26  RRRRGIPAAVTGFLSRRHAPALQRRLAPLHGEDLISPMRS 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,322,555
Number of Sequences: 37544
Number of extensions: 470956
Number of successful extensions: 1220
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)