Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_K20
(853 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC017117-3|AAF16619.1| 339|Caenorhabditis elegans Hypothetical ... 31 0.79
AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical... 31 1.0
AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical... 31 1.0
AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical... 31 1.0
AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans large-conduct... 31 1.0
AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans large-conduct... 31 1.0
AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans large-conduct... 31 1.0
Z81070-7|CAD30437.1| 608|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z81070-6|CAB03000.1| 677|Caenorhabditis elegans Hypothetical pr... 29 3.2
U40029-11|AAA81130.1| 914|Caenorhabditis elegans Tudor staphylo... 29 4.2
AF022982-8|AAB69934.1| 234|Caenorhabditis elegans Hypothetical ... 28 9.7
>AC017117-3|AAF16619.1| 339|Caenorhabditis elegans Hypothetical
protein F43C11.9 protein.
Length = 339
Score = 31.5 bits (68), Expect = 0.79
Identities = 23/74 (31%), Positives = 36/74 (48%)
Frame = -3
Query: 665 PIXSDPVRI*NPAYVSANCKPGSPXASLVFSHREPLAVRYPPSTVWHTSRSQSGIPMSET 486
P+ + P ++ +P + KP + +S S EP + PPS V +S+SG+P
Sbjct: 214 PLTAKPAKLPSPRQPES--KPSNEASS---SQLEPTSASQPPSRVDQILKSRSGLPTK-- 266
Query: 485 RPPLDLDKASEVDP 444
D D +SEV P
Sbjct: 267 ----DADSSSEVAP 276
>AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical
protein Y51A2D.19c protein.
Length = 1131
Score = 31.1 bits (67), Expect = 1.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 484 DRLWIWIRLQKWIQFFTVSPVYV 416
D++W + + WI FFT+ P +V
Sbjct: 202 DKVWFLLEMYSWIDFFTIPPSFV 224
>AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical
protein Y51A2D.19b protein.
Length = 1118
Score = 31.1 bits (67), Expect = 1.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 484 DRLWIWIRLQKWIQFFTVSPVYV 416
D++W + + WI FFT+ P +V
Sbjct: 202 DKVWFLLEMYSWIDFFTIPPSFV 224
>AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical
protein Y51A2D.19a protein.
Length = 1140
Score = 31.1 bits (67), Expect = 1.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 484 DRLWIWIRLQKWIQFFTVSPVYV 416
D++W + + WI FFT+ P +V
Sbjct: 202 DKVWFLLEMYSWIDFFTIPPSFV 224
>AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans
large-conductance calcium-activatedpotassium channel
SLO-1c protein.
Length = 1131
Score = 31.1 bits (67), Expect = 1.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 484 DRLWIWIRLQKWIQFFTVSPVYV 416
D++W + + WI FFT+ P +V
Sbjct: 202 DKVWFLLEMYSWIDFFTIPPSFV 224
>AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans
large-conductance calcium-activatedpotassium channel
SLO-1b protein.
Length = 1118
Score = 31.1 bits (67), Expect = 1.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 484 DRLWIWIRLQKWIQFFTVSPVYV 416
D++W + + WI FFT+ P +V
Sbjct: 202 DKVWFLLEMYSWIDFFTIPPSFV 224
>AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans
large-conductance calcium-activatedpotassium channel
SLO-1a protein.
Length = 1140
Score = 31.1 bits (67), Expect = 1.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 484 DRLWIWIRLQKWIQFFTVSPVYV 416
D++W + + WI FFT+ P +V
Sbjct: 202 DKVWFLLEMYSWIDFFTIPPSFV 224
>Z81070-7|CAD30437.1| 608|Caenorhabditis elegans Hypothetical
protein F26E4.7b protein.
Length = 608
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 110 INYVLLIFVLSNCVNCNVYIGNGKMKQLYAWKQL-GYDFNGTKYIKDAD 253
I +++ IF+L + +++ +M L W+ L GY T Y+KD++
Sbjct: 2 IPFLVFIFILFTPIKSDLWAETERMPDLQQWRALCGYYAVATAYMKDSN 50
>Z81070-6|CAB03000.1| 677|Caenorhabditis elegans Hypothetical
protein F26E4.7a protein.
Length = 677
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 110 INYVLLIFVLSNCVNCNVYIGNGKMKQLYAWKQL-GYDFNGTKYIKDAD 253
I +++ IF+L + +++ +M L W+ L GY T Y+KD++
Sbjct: 2 IPFLVFIFILFTPIKSDLWAETERMPDLQQWRALCGYYAVATAYMKDSN 50
>U40029-11|AAA81130.1| 914|Caenorhabditis elegans Tudor
staphylococcal nuclease homologprotein 1 protein.
Length = 914
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +1
Query: 382 KEEIWDSIDVKLHRQETQ*KTGSTSEALSKSRGGLVSDIGIPDCDRLVCQTVDGG 546
K+ IW + + H++E + + TSE R V+DI P R Q ++ G
Sbjct: 662 KKNIWANFTEEQHQEEVEVQQADTSERKQNFRQVAVTDIA-PGALRFSAQNIEDG 715
>AF022982-8|AAB69934.1| 234|Caenorhabditis elegans Hypothetical
protein T23B12.1 protein.
Length = 234
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -3
Query: 482 PPLDLDKASEVDPVFYCVSCLCSLTSMESQIS-SLGPSKI 366
P + +++ASE +YC +CL S ++S S S P+K+
Sbjct: 180 PTVSIEEASEPSFKYYCKTCLVSKKVIDSNRSRSPSPAKL 219
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,028,462
Number of Sequences: 27780
Number of extensions: 404701
Number of successful extensions: 1157
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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