Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_K19
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.29 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.38 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.5  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   1.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.1  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    26   8.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
 Frame = +3

Query: 765 PXPKXKPXPPPRAXRGFXFXAPPXPXPPP----TXPPXXPRP 878
           P P   P PPP    G     PP P PPP      PP  P P
Sbjct: 744 PAPAPIPVPPPAPIMG----GPPPPPPPPGVAGAGPPPPPPP 781



 Score = 29.1 bits (62), Expect = 0.87
 Identities = 21/65 (32%), Positives = 25/65 (38%)
 Frame = +3

Query: 657 LXXTPLXPXQKXX*KXPSGXPLXFPXPRGXVGERVXPXPKXKPXPPPRAXRGFXFXAPPX 836
           L  +P  P        P+  P+  P P   +G    P P   P PPP    G     PP 
Sbjct: 728 LLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMG---GPPP---PPPPP----GVAGAGPPP 777

Query: 837 PXPPP 851
           P PPP
Sbjct: 778 PPPPP 782


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 19/58 (32%), Positives = 23/58 (39%)
 Frame = +3

Query: 705  PSGXPLXFPXPRGXVGERVXPXPKXKPXPPPRAXRGFXFXAPPXPXPPPTXPPXXPRP 878
            PSG P   P P+  V     P P     P P+   G        P PPP+  P  P+P
Sbjct: 1155 PSGAP---PVPKPSVAAPPVPAPSSGIPPVPKPAAGVP------PVPPPSEAPPVPKP 1203



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 21/58 (36%), Positives = 24/58 (41%)
 Frame = +3

Query: 705  PSGXPLXFPXPRGXVGERVXPXPKXKPXPPPRAXRGFXFXAPPXPXPPPTXPPXXPRP 878
            PSG P   P P+  V     P P   P P P+        APP P P    PP  P+P
Sbjct: 1136 PSGAP---PVPKPSVAAPPVPAPSGAP-PVPKP----SVAAPPVPAPSSGIPP-VPKP 1184



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 20/53 (37%), Positives = 21/53 (39%)
 Frame = +3

Query: 705  PSGXPLXFPXPRGXVGERVXPXPKXKPXPPPRAXRGFXFXAPPXPXPPPTXPP 863
            PSG P   P P+  V     P P     PP  A  G    APP P P    PP
Sbjct: 1088 PSGIP---PVPKPSVAAPPVPKPSVA-VPPVPAPSG----APPVPKPSVAAPP 1132



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 19/57 (33%), Positives = 22/57 (38%)
 Frame = +3

Query: 708  SGXPLXFPXPRGXVGERVXPXPKXKPXPPPRAXRGFXFXAPPXPXPPPTXPPXXPRP 878
            SG P   P P+   G    P P   P P P+   G        P PPP+  P  P P
Sbjct: 1176 SGIP---PVPKPAAGVPPVPPPSEAP-PVPKPSVGVP------PVPPPSTAPPVPTP 1222


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = +3

Query: 771 PKXKPXPPPRAXRGFXFXAPPXPXPPPTXPPXXPRP 878
           P   P  PP A       AP  P  PP+ P   P P
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = +3

Query: 783 PXPPPRAXRGFXFXAPPXPXPPPTXPPXXPRP 878
           P PPPR+        PP     P  PP    P
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 24/81 (29%), Positives = 27/81 (33%)
 Frame = +3

Query: 636 AKXGTPWLXXTPLXPXQKXX*KXPSGXPLXFPXPRGXVGERVXPXPKXKPXPPPRAXRGF 815
           ++  TP +   P  P        PS  P     P G       P P   P  PP    G 
Sbjct: 410 SRTSTPPVPTPPSLPPSAPPSLPPSAPP---SLPMG--APAAPPLPPSAPIAPP-LPAGM 463

Query: 816 XFXAPPXPXPPPTXPPXXPRP 878
              APP P   P  PP  P P
Sbjct: 464 P-AAPPLPPAAPA-PPPAPAP 482


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.0 bits (52), Expect(2) = 1.5
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +3

Query: 825 APPXPXPPPTXPP 863
           APP P PPPT PP
Sbjct: 237 APPPP-PPPTLPP 248



 Score = 21.4 bits (43), Expect(2) = 1.5
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 843 PPPTXPPXXPRP 878
           PPP  P   PRP
Sbjct: 274 PPPATPSQPPRP 285


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +3

Query: 771 PKXKPXPPPRAXRGFXFXAPPXPXPPP 851
           P   P PPP    GF   + P P PPP
Sbjct: 5   PPGNPPPPPPPP-GFEPPSQPPPPPPP 30


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 783  PXPPPRAXRGFXFXAPPXPXPPPTXPP 863
            P PPP +       APP P  PP+ PP
Sbjct: 1707 PPPPPMSVPPPP-SAPPMPAGPPSAPP 1732


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 783 PXPPPRAXRGFXFXAPPXPXPPPTXPPXXP 872
           P P P A +   + A P P PP    P  P
Sbjct: 84  PAPAPAASQNRAYGAAPQPYPPQGGYPQQP 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,263,832
Number of Sequences: 5004
Number of extensions: 12203
Number of successful extensions: 83
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)