Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_K15
         (1005 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   0.32 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.81 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 970  PXPPPPPP 993
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect(2) = 0.32
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 976  PPPPPPXP 999
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362



 Score = 21.4 bits (43), Expect(2) = 0.32
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +1

Query: 949  RSLXNXSPXPPPPPP 993
            R+       PPPPPP
Sbjct: 1347 RTAWRQQQPPPPPPP 1361


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.81
 Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = +1

Query: 943  SSRSLX-NXSPXPPPPPP 993
            S+R++  + SP PPPPPP
Sbjct: 1847 SARNIPVSGSPEPPPPPP 1864


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 970 PXPPPPPP 993
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 22.6 bits (46), Expect = 5.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 970 PXPPPPPPXP 999
           P P PPPP P
Sbjct: 339 PKPAPPPPPP 348


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 12/40 (30%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
 Frame = +1

Query: 358 PAXPCAXXRPPHGPXPGXXPRXLXXXPPXXPP--PPXPXP 471
           P    +  + P  P  G  P      PP  PP  PP   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related protein
            STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 7.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 1004 GXGXGGGGGGXG 969
            G   GGGGGG G
Sbjct: 42   GANNGGGGGGLG 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.149    0.529 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,394
Number of Sequences: 438
Number of extensions: 4184
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33379164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)