Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_K14
(858 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce... 211 1e-55
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 73 7e-14
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 53 6e-08
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 52 1e-07
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 47 4e-06
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 39 8e-04
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 29 1.1
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 27 4.5
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 26 6.0
SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane synthase|Schiz... 26 6.0
>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 204
Score = 211 bits (515), Expect = 1e-55
Identities = 90/162 (55%), Positives = 129/162 (79%)
Frame = +3
Query: 141 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 320
MSI+ YNGG+ VAM G++CVAIA+D R G+Q+ +++ NFPKVF MG Y+GL GLATD
Sbjct: 1 MSIMEYNGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDV 60
Query: 321 QTVFQRLKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPY 500
QT+++ ++++NLY+ +E R ++PKTF+ ++S+ LYE+RFGPYF PV+AG+ DN P+
Sbjct: 61 QTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVS-NDNTPF 119
Query: 501 VCNMDLIGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDE 626
+C D IGC + EDF+VSGT +EQLYGMCE+++EPNL+PD+
Sbjct: 120 ICGFDSIGCIDFAEDFIVSGTATEQLYGMCESVYEPNLEPDD 161
Score = 35.1 bits (77), Expect = 0.013
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +1
Query: 628 LFETISXALVNAADRDAILRLGCPLF 705
LFETIS AL+NA DRD I GC ++
Sbjct: 162 LFETISQALLNAQDRDCISGWGCVVY 187
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 72.5 bits (170), Expect = 7e-14
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +3
Query: 159 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNF-PKVFQMGPTLYVGLPGLATDTQTVFQ 335
NGG VA+ G +A D R + ++T F P+V ++G L +G G D + +
Sbjct: 12 NGGTTVAIAGDGFAILAGDTR-SVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVK 70
Query: 336 RLKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMD 515
R++ R++LY R M ++ + M+ LLY +RF PY++ +AG+D + + + + D
Sbjct: 71 RIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDK-EGKGEIYSFD 129
Query: 516 LIG 524
+G
Sbjct: 130 PVG 132
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 52.8 bits (121), Expect = 6e-08
Identities = 37/157 (23%), Positives = 74/157 (47%)
Frame = +3
Query: 162 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 341
G + A++ +D V +A D R + A + K+ Q+ ++ G A DTQTV L
Sbjct: 24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLL 83
Query: 342 KFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDLI 521
K+ +++Y ++ T + + S + Y+ + ++AG D V ++ L
Sbjct: 84 KYYLSMYRIQFGHDPSVHTAATLASEMCYQNK-NMLSAGLIVAGYDEKTGGD-VYSIPLG 141
Query: 522 GCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDETL 632
G ++ + + G+ S +YG C+A + N+ +E +
Sbjct: 142 GSLHK-QPLAIGGSGSAFIYGFCDANFRENMTQEEAV 177
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 52.0 bits (119), Expect = 1e-07
Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Frame = +3
Query: 162 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 341
G +V+A+K D V IA D + + ++ ++G VG G +D Q + QRL
Sbjct: 43 GSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQI-QRL 101
Query: 342 KFRMNLYE--LKENRMMRPKTFSAMLSNLLYERR--FGPYFIEPVIAGLDPYDNQPYVCN 509
++ + E + ++P LS +LY RR PY+ + ++AG+D + +PYV
Sbjct: 102 LEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENKEPYVAF 161
Query: 510 MDLIG 524
DL G
Sbjct: 162 ADLRG 166
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 46.8 bits (106), Expect = 4e-06
Identities = 36/161 (22%), Positives = 71/161 (44%), Gaps = 4/161 (2%)
Frame = +3
Query: 162 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 341
G +A++G +C+ I +++ + Q VS NF K+ + + + GL D + + +
Sbjct: 30 GTTAIALRGNECIVIGVERKNVPKLQNVS-NFQKIAMVDNHVCLAFAGLNADARILIDKA 88
Query: 342 KFRMNLYELKENRMMRPKTFSAMLSNLL--YERRFG--PYFIEPVIAGLDPYDNQPYVCN 509
+ ++L + + + ++ + Y + G P+ + +IAG D DN P V
Sbjct: 89 RVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRVYQ 148
Query: 510 MDLIGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDETL 632
+ G N + + G S+ E W+ L DET+
Sbjct: 149 TEPAGIYNAWKATAI-GRASKAAREYLEKNWKEGLSRDETI 188
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 39.1 bits (87), Expect = 8e-04
Identities = 37/158 (23%), Positives = 64/158 (40%)
Frame = +3
Query: 159 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQR 338
+G +A + Q + + D R S KV ++ P L L G A D Q
Sbjct: 60 HGTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETV 119
Query: 339 LKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDL 518
L L++L+ ++ S +LSN+ Y + + ++AG Y + D
Sbjct: 120 LGMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGTMLAGTGKGGTALYYIDSD- 178
Query: 519 IGCPNEPEDFVVSGTCSEQLYGMCEALWEPNLKPDETL 632
G + + F V G+ S YG+ ++ + +L E L
Sbjct: 179 -GTRLKGDLFSV-GSGSTFAYGVLDSGYRWDLSKQEAL 214
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 165 GAVVAMKGQD-CVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLAT 314
GA+ +D VA A D G+ S + +VF++G L VG+ G T
Sbjct: 407 GALFKFDTEDEVVAWANDSPVGLAGYLFSKDISRVFRVGEALQVGMVGCNT 457
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +3
Query: 69 IQYFELITLQ*FQVKKCLSFYITNMSIL----AYNGGAVVAMK 185
++YF+ + + +VK SF+I N +L AYNG V +K
Sbjct: 441 LKYFDQVVVGLKEVKDAFSFFIFNRFVLVYVPAYNGVDPVTLK 483
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 26.2 bits (55), Expect = 6.0
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 191 RLCGHRYGQAVWYTSSNSINQLPKSIPNGTHIV 289
RL G Y V Y+S NS+ LPK P+ H+V
Sbjct: 239 RLRGKTYDYKVEYSSINSLFLLPK--PDEQHVV 269
>SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane
synthase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 336
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 239 NSINQLPKSIPNGTHIVCRPSRS 307
+S+ LP +P+G I C P RS
Sbjct: 84 HSLKDLPSEMPDGMVIACIPKRS 106
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,471,396
Number of Sequences: 5004
Number of extensions: 73336
Number of successful extensions: 182
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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