Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_K12
         (947 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    61   1e-11
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   7.1  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   9.3  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 61.3 bits (142), Expect = 1e-11
 Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
 Frame = +2

Query: 68  MSHEWKDKVVFITGAATGIGESVVRILLDEGVKHIAILDIAEEAGKSLQVELNSKYGNKT 247
           M   W D+V  +TGA +GIG+ ++  L+ +G+K I I    ++  K+L  EL SK G K 
Sbjct: 1   MEQNWIDEVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKM-KTLVEELKSKPG-KL 58

Query: 248 KFYRSDVTNEEHFLGILNAVXQEQGGIDVVIXNA------ALMNXSIGIYKKAIEVNV 403
              + D++N+   L ++  V +  G ID++I NA       L N  +  +KK  ++N+
Sbjct: 59  VPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINL 116


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 139 DHRFTDARCSTGY 101
           D+ FT+ RC  GY
Sbjct: 290 DYGFTECRCDPGY 302


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 109 TGYKNYFIFPFVRHLQRSVNK 47
           T +KN  IF   +H++ ++NK
Sbjct: 164 TNFKNSNIFQLKQHMRDTMNK 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,273
Number of Sequences: 438
Number of extensions: 3393
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)