Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_K09
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.7  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    23   3.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   8.2  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 369 TFFHHEYPWILSASDDQTIRIWNWQSRQCISVLT 470
           + F  +YPW+L  S  + IR +  +    +SVLT
Sbjct: 99  SLFWQQYPWVLGVSLCK-IRAYVSEMSSYVSVLT 131


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 287 ISARHEKRLLNMEANSTYWTI 225
           +  RHEKRLLN E  S+Y T+
Sbjct: 50  LCGRHEKRLLN-ELLSSYNTL 69



 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 330 LFTLLGHLDYIRTTFFHHEY 389
           LF+ L     ++ T+FHH Y
Sbjct: 25  LFSFLRTRTKLQPTYFHHTY 44


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 287 ISARHEKRLLNMEANSTYWTI 225
           +  RHEKRLLN E  S+Y T+
Sbjct: 50  LCGRHEKRLLN-ELLSSYNTL 69



 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 330 LFTLLGHLDYIRTTFFHHEY 389
           LF+ L     ++ T+FHH Y
Sbjct: 25  LFSFLRTRTKLQPTYFHHTY 44


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 255 YGSKFHVLDHHVH 217
           YG  +H+ +HHVH
Sbjct: 270 YGGVYHLDNHHVH 282


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 241 PRTGPSCSSNFSSN 200
           PRTG +CSS  SS+
Sbjct: 12  PRTGTNCSSGSSSD 25


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +3

Query: 318 QRRCLFTLLGHLDYIRTT 371
           +R  + T++GH+D+ +TT
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,062
Number of Sequences: 438
Number of extensions: 4844
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)