Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_K06
(1121 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 30 0.51
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 30 0.51
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.2
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 28 2.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 2.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 2.7
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 23 3.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 4.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 8.3
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 30.3 bits (65), Expect = 0.51
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -3
Query: 1113 GXGGGGRGXGXGXARGGXRGXPXGXXXGXG 1024
G GGGRG G RGG RG G G
Sbjct: 26 GGFGGGRGGARGGGRGGARGGRGGRGGARG 55
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 30.3 bits (65), Expect = 0.51
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -3
Query: 1113 GXGGGGRGXGXGXARGGXRGXPXGXXXG 1030
G GGG RG G +RGG RG G G
Sbjct: 161 GFGGGSRGGFGGGSRGGSRGGFRGGSRG 188
Score = 26.2 bits (55), Expect = 8.3
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 1113 GXGGGGRGXGXGXARGGXRGXPXGXXXG 1030
G GG RG G +RGG G G G
Sbjct: 153 GFGGNSRGGFGGGSRGGFGGGSRGGSRG 180
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = +2
Query: 1010 AXVXXPXPXXXPXGXPRXPPRAXPXPXPRPPPPXP 1114
A + P P P P P P P P P P P
Sbjct: 453 APIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 28.3 bits (60), Expect = 2.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 1104 GGGRGXGXGXARGGXRGXPXG 1042
G GRG G G RGG RG G
Sbjct: 142 GRGRGRGRGRGRGGYRGRARG 162
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.3 bits (60), Expect = 2.1
Identities = 15/49 (30%), Positives = 15/49 (30%), Gaps = 2/49 (4%)
Frame = +3
Query: 138 PXXPPPP--PPXXXXXXXXXXXXXXXXXXPXXXTXTPPPPXPXXPPXPP 278
P PPPP PP PPP P PP PP
Sbjct: 238 PPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPRPP 286
Score = 26.2 bits (55), Expect = 8.3
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 1064 PPRAXPXPXPRPPPP 1108
P +A P P P PPPP
Sbjct: 229 PKQADPLPAPPPPPP 243
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 2.7
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +2
Query: 1031 PXXXPXGXPRXPPRAXPXPXPRPPPPXP 1114
P P P P +A P P PPP P
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQP 177
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 23.0 bits (47), Expect(2) = 3.2
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +3
Query: 138 PXXPPPPPP 164
P PPPPPP
Sbjct: 21 PSQPPPPPP 29
Score = 22.6 bits (46), Expect(2) = 3.2
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +3
Query: 135 NPXXPPPPP 161
NP PPPPP
Sbjct: 8 NPPPPPPPP 16
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +2
Query: 1004 AXAXVXXPXPXXXPXGXPRXPPRAXPXPXPRPPPPXP 1114
A A + P P G P PP PPPP P
Sbjct: 745 APAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 766 PXPPXPPPRAGXXPXPP 816
P PP PP AG P PP
Sbjct: 762 PPPPPPPGVAGAGPPPP 778
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 8.3
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Frame = +2
Query: 1025 PXPXXXPXGXPRXPPRAXPXPX---PRPPPPXP 1114
P P P P PP A P P PPPP P
Sbjct: 1705 PTPPPPPMSVP-PPPSAPPMPAGPPSAPPPPLP 1736
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,566,450
Number of Sequences: 5004
Number of extensions: 20217
Number of successful extensions: 267
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 595662418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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