Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_K06
         (1121 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.70 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   2.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   6.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   6.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.70
 Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = +2

Query: 1025 PXPXXXPXGXPRXPPR-AXPXPXPRPPPPXP 1114
            P P   P   P+ P R + P P   PPP  P
Sbjct: 21   PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 1098 GRGXGXGXARGGXRG 1054
            GRG G G  +GG RG
Sbjct: 79   GRGKGRGHGKGGSRG 93



 Score = 22.6 bits (46), Expect = 6.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 1104 GGGRGXGXGXARGGXRG 1054
            G G G G    RGG RG
Sbjct: 83   GRGHGKGGSRGRGGNRG 99


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 1085 PXPRPPPPXP 1114
            P P PPPP P
Sbjct: 339  PKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 8.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 246 PPXPXXPPXPP 278
           PP P  PP PP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 8.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 1079 PXPXPRPPPP 1108
            P P P PPPP
Sbjct: 339  PKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 766  PXPPXPPPRAG 798
            P PP PPP +G
Sbjct: 1355 PPPPPPPPSSG 1365


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 766  PXPPXPPPR 792
            P PP PPPR
Sbjct: 1857 PEPPPPPPR 1865


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,941
Number of Sequences: 438
Number of extensions: 4737
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 37837314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)