Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_K02
         (899 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.044
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   2.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.9  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   2.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   5.0  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   6.6  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   6.6  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   6.6  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   6.6  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   6.6  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   6.6  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   6.6  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   6.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   8.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.5 bits (63), Expect = 0.044
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +3

Query: 546 PXPPXXXPPPXPPPXPPPXXPPXXP 620
           P  P    PP P   PPP  PP  P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 26.2 bits (55), Expect = 0.41
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 546 PXPPXXXPPPXPPPXPPPXXPP 611
           P  P   PPP  PP  PP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 556 PXXXPPPXXPPXPPPXXPXXXPGAP 630
           P    PP     PPP  P   PGAP
Sbjct: 34  PQRGSPPNPSQGPPPGGP---PGAP 55


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect(2) = 2.7
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 567  PPPXPPP 587
            PPP PPP
Sbjct: 1355 PPPPPPP 1361



 Score = 20.6 bits (41), Expect(2) = 2.7
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 579  PPPXPPP 599
            PPP PPP
Sbjct: 1356 PPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 567 PPPXPPPXPPPXXPP 611
           P P PPP PP    P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 552 PPXXXPPPXPPPXPPP 599
           PP   PPP PP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 568 PPPXXPPXPPP 600
           PP   PP PPP
Sbjct: 338 PPKPAPPPPPP 348


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 330 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQTPQT 437
           +DEAE    S+  G    + QS I +VAR+ +T  T
Sbjct: 272 SDEAEPSSTSKKSGIVRSHQQSCINRVARETKTAGT 307


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 375 RHQYCQSWILQVARQRQTPQTTCHSKS 455
           RH   ++W+    R + TPQ+   S++
Sbjct: 241 RHLERKAWVASFGRPKMTPQSLLPSQT 267


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 330 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 425
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 330 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 425
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 330 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 425
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 330 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 425
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 330 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 425
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 330 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 425
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 330 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 425
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 330 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 425
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 322 VSEQTRLKYASAPDGKVPVI 381
           V EQT      A D KVP+I
Sbjct: 230 VKEQTLQSIEMAKDAKVPII 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,821
Number of Sequences: 438
Number of extensions: 6630
Number of successful extensions: 47
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)