Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_J24
         (909 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820...    31   1.3  
03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-65...    31   1.7  
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417...    28   8.9  

>01_06_1201 - 35380338-35380496,35381200-35381322,35381521-35382066,
            35382285-35382392,35382695-35383225,35383614-35383743,
            35384225-35385081,35385303-35385408,35387119-35387230,
            35389255-35389347,35389723-35389771,35389859-35389897,
            35390671-35390757,35391613-35391873,35391957-35392166,
            35392413-35393507
          Length = 1501

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +2

Query: 212  EKYPHQA---WRFFGYRYRILKHQRALRCXNEEDGRRNEQIQITTHEXRKQQFLQE 370
            EKYP  A    RF G+R R+L   + L     E+G       I  +E RK +FL+E
Sbjct: 1213 EKYPVMAELIHRFQGFRERLLADPKFLHRLAIEEGISITTTLIAQYEKRKGRFLEE 1268


>03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-653886,
            654027-654247,654395-654533,654628-654710,654824-655036,
            655099-655494,655587-655758,656085-656276,656363-656569,
            656661-656753,656957-657156,657329-657838,658114-658184,
            658322-658963,659057-659207,659425-659665
          Length = 1360

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -3

Query: 259  SVSITEKSPSLMGIFLLRPLSAIFHVICRVEI-VETKQTLKRSRVNTFHWNNTH 101
            S+ I+  S  ++  ++L+P  A    IC   + V++KQ+LK     TF W +TH
Sbjct: 884  SLLISVGSKQVLTTWVLQPKVAENRHICSSGLDVDSKQSLKGDSAMTFQWLSTH 937


>03_05_0520 +
           25139314-25139364,25139580-25139711,25141594-25141731,
           25143191-25143241,25143662-25143751,25143854-25144000,
           25144108-25144218,25144307-25144375,25144777-25145517,
           25145840-25146004,25146376-25146442,25146580-25146704,
           25148714-25148983,25149065-25149199,25149316-25149497,
           25149669-25149744
          Length = 849

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 10/31 (32%), Positives = 23/31 (74%)
 Frame = +3

Query: 246 VIDTEFSSIRERFDAXMRKMEEEMSKFRSQL 338
           V DTE ++ +E+F+A ++K  +++ ++R Q+
Sbjct: 18  VYDTENANQKEKFEADLKKEIKKLQRYRDQI 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,834,932
Number of Sequences: 37544
Number of extensions: 254852
Number of successful extensions: 4420
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3690
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)