Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_J21
(897 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474... 155 6e-38
11_06_0610 - 25449085-25453284 31 1.6
12_02_1174 - 26696869-26698191 30 2.9
03_02_0342 - 7645323-7645909,7646323-7646491 30 2.9
01_02_0007 + 10132380-10133201 30 2.9
07_03_0361 + 17215312-17216217 29 3.8
08_01_0059 - 394001-394708 29 5.0
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 29 5.0
02_05_1309 + 35627549-35627679,35628377-35629361 29 5.0
03_05_0292 + 22846273-22846377,22847161-22847823 29 6.6
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 28 8.8
>01_06_1177 +
35147036-35147038,35147128-35147220,35147322-35147406,
35147588-35147760
Length = 117
Score = 155 bits (375), Expect = 6e-38
Identities = 69/110 (62%), Positives = 89/110 (80%)
Frame = +1
Query: 88 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 267
MT KRRNGGR KHGRGHVK +RC+NCA+C PKDKAIK+F +RNIVE AA+RD+ +A V+
Sbjct: 1 MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60
Query: 268 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQ 417
+ LPKLYAK+H+CVSCAIH+ +VR RS+++RR R PP+ F R + P+
Sbjct: 61 GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPE-RFRRRVPDPR 109
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 783 PPPGP-KXPXPLXGPLFXPXLAPIDXXGPXVRPAPRP 890
PPP P P P PL P AP+ P V+P P P
Sbjct: 1297 PPPAPVSLPPPAVKPL--PPPAPVSLPPPAVKPLPPP 1331
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +3
Query: 783 PPPGPKXPXPLXGPLFXPXLAPIDXXGPXVRPAPRPTR 896
PPP P P + P+ P P P P P PTR
Sbjct: 160 PPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPPTR 197
>03_02_0342 - 7645323-7645909,7646323-7646491
Length = 251
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 768 MXSXXPPPGPKXPXPLXGPLFXPXLAPIDXXGPXV-RPAPRP 890
M + PPP P+ P P P P L PI P PAP+P
Sbjct: 170 MFAPPPPPPPRPPAPEYKPP-TPTLTPIPTPEPSYGPPAPKP 210
>01_02_0007 + 10132380-10133201
Length = 273
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 783 PPPGPKXPXPLXGPLFXPXLAPIDXXGPXVRPAPRP 890
P PGP+ P P GP P P+ P +P P+P
Sbjct: 98 PLPGPQ-PLPQPGPQPNPNPQPLPQPNPNPQPLPQP 132
>07_03_0361 + 17215312-17216217
Length = 301
Score = 29.5 bits (63), Expect = 3.8
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Frame = +1
Query: 55 RSLFTGSEVRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAA 234
R+ +G+E T K++ GG G G + V+ + +A K+ ++ +VE AA
Sbjct: 47 RAAVSGTEQAPETTKKKGGGG---GGGDERVVQVHSAEELDGALRAAKERLV--VVEFAA 101
Query: 235 VRDINDASVYP-MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKD 360
+N + +YP M +L + + + + S R +++
Sbjct: 102 SHSVNSSRIYPCMVELSRTCGDVDFLLVMGDESDATRELCRRE 144
>08_01_0059 - 394001-394708
Length = 235
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +3
Query: 783 PPPGPKXPXPLXGPLFXPXLAPIDXXGPXVRPAPRPT 893
PPP + P P P P AP P +RP P PT
Sbjct: 4 PPPPRRAPPPPATPPPPPRRAP-PPPSPPIRPPPPPT 39
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +3
Query: 783 PPPGPKXPXPLXGPLFXPXLAPIDXXGPXVRPAPRP 890
PP P P PL L P P GP +PAP P
Sbjct: 1165 PPATPPPPPPLSPSLPPPPPPPPLPSGPPPQPAPPP 1200
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 783 PPPGPKXPXPLXGPLFXPXLAPIDXXGPXVRPAPRPT 893
PPP P P P GP P P+ P + P P P+
Sbjct: 1180 PPPPPPPPLP-SGPPPQPAPPPLPIQPPPIPPPPVPS 1215
>02_05_1309 + 35627549-35627679,35628377-35629361
Length = 371
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = -3
Query: 889 GRGAGRTXGPXXSIGARXGXKXGPXXGXGXFGPGGGXXEXIXSREKP 749
G G G +GA G G G G G GGG + E+P
Sbjct: 158 GAGEEEVVGVGGGVGAEGGRGGGGEGGRGGAGAGGGDDGGLGLAEEP 204
>03_05_0292 + 22846273-22846377,22847161-22847823
Length = 255
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = -3
Query: 895 RVGRGAGRTXGPXXSIGARXGXKXGPXXGXGXFGPGG 785
R G G GR G GAR G G G G G GG
Sbjct: 55 RGGGGGGRGDGARDGGGARGGGGRGARGGGGARGGGG 91
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = +3
Query: 774 SXXPPPGPKXPXPLXGPLFXPXLAPIDXXGPXVRPAPRP 890
S PPP P P P P A + P P P+P
Sbjct: 201 STLPPPPPPPPLPASSEPVDPSAASLPPLPPPPPPPPKP 239
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,352,251
Number of Sequences: 37544
Number of extensions: 362089
Number of successful extensions: 1558
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1523
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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