Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_J21
         (897 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical pr...   161   6e-40
U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    35   0.069
Z66565-6|CAA91483.1|  165|Caenorhabditis elegans Hypothetical pr...    32   0.64 
AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical...    31   0.85 
AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical ...    31   0.85 
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical pr...    29   6.0  
Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical ...    28   7.9  
AF098992-4|AAK73869.2|  250|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical
           protein F39B2.6 protein.
          Length = 117

 Score =  161 bits (391), Expect = 6e-40
 Identities = 73/98 (74%), Positives = 80/98 (81%)
 Frame = +1

Query: 88  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 267
           MT KRRN GR K  RGHV  +RCTNC RC PKDKAIKKFV+RNIVEAAAVRDI DAS Y 
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query: 268 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 381
            + LPKLY KLHYC++CAIHSKVVRNRS++ RR R PP
Sbjct: 61  QYALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPP 98


>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 35.1 bits (77), Expect = 0.069
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +3

Query: 786 PPGPKXPXPLXGPLFXPXLAPIDXXGPXVRPAPRPTR 896
           PPGP+ P  L GP   P   P    GP  RP P P+R
Sbjct: 70  PPGPQGPSDLPGPSGAPP-GPPHPSGPPHRPHPHPSR 105


>Z66565-6|CAA91483.1|  165|Caenorhabditis elegans Hypothetical
           protein T04F8.8 protein.
          Length = 165

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 17/53 (32%), Positives = 20/53 (37%)
 Frame = +3

Query: 732 GGRXGXGFSLDXMXSXXPPPGPKXPXPLXGPLFXPXLAPIDXXGPXVRPAPRP 890
           GG  G G+         PPP P  P P   P   P   P     P  +P P+P
Sbjct: 82  GGGGGGGYGRPQGYVPPPPPPPTQPEPEPEPRPEPQPEPQPEPQPEPQPEPQP 134


>AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10b protein.
          Length = 312

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
 Frame = +1

Query: 136 HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQL-PKLYAKLHYCV 312
           H+K ++C NC+     +K+++  +IR+  E A   ++  A      +L P    K H   
Sbjct: 80  HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 139

Query: 313 SCAIHSKVV-RNRSKKDRRIRTPPKS 387
            C    K++ + R  K  ++++ P S
Sbjct: 140 -CKNREKIIEKQRVSKILKVQSLPSS 164


>AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10a protein.
          Length = 430

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
 Frame = +1

Query: 136 HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQL-PKLYAKLHYCV 312
           H+K ++C NC+     +K+++  +IR+  E A   ++  A      +L P    K H   
Sbjct: 198 HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 257

Query: 313 SCAIHSKVV-RNRSKKDRRIRTPPKS 387
            C    K++ + R  K  ++++ P S
Sbjct: 258 -CKNREKIIEKQRVSKILKVQSLPSS 282


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +3

Query: 783 PPPGPKX-PXPLXGPLFXPXLAPIDXXGPXVRPAPRP 890
           P P PK  P P   P+  P   PI    P  +P P+P
Sbjct: 184 PKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKP 220



 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +3

Query: 783 PPPGPKX-PXPLXGPLFXPXLAPIDXXGPXVRPAPRP 890
           P P PK  P P   P+  P   PI    P  +P P+P
Sbjct: 218 PKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKP 254


>Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical
           protein T28C6.1 protein.
          Length = 281

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/35 (42%), Positives = 15/35 (42%)
 Frame = -3

Query: 889 GRGAGRTXGPXXSIGARXGXKXGPXXGXGXFGPGG 785
           G G GR  G   S G R G   G   G G  G GG
Sbjct: 51  GTGGGRGGGRGGSGGGRGGGSGGGRGGSGGAGAGG 85


>Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical
           protein Y49E10.10 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +3

Query: 783 PPPGPKXPXPLXGPLFXPXLAPIDXXGPXVRPAPRP 890
           PPP  K P P         +AP+    P   PAP P
Sbjct: 200 PPPTTKAPPPPTTNKEVTTVAPVPKPAPVTAPAPNP 235


>Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical
           protein B0001.5 protein.
          Length = 553

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +3

Query: 303 LLRVMRHPQQSCQEQIEERQKNPYSSQE*LP*GHVTSTGSAK 428
           ++ V + P +S   ++ + QKN Y+S E    GH TS+ +A+
Sbjct: 374 VINVYKEPSRSHANELYDSQKNQYTSHE----GHSTSSPTAE 411


>AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical
           protein Y105C5B.1 protein.
          Length = 311

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -1

Query: 201 LFDGLVLWHAPRAVCASHGFNVTTSMLGASSITALTSHVSN 79
           L DGLV W+  R V A     + T  L A  +  L  HVSN
Sbjct: 2   LMDGLV-WNGNREVSAGRLDTLNTFFLNALELILLIIHVSN 41


>AF098992-4|AAK73869.2|  250|Caenorhabditis elegans Hypothetical
           protein F53C3.6a protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/38 (47%), Positives = 18/38 (47%)
 Frame = -3

Query: 895 RVGRGAGRTXGPXXSIGARXGXKXGPXXGXGXFGPGGG 782
           R GRG G   G   S GAR G   G   G G  G GGG
Sbjct: 22  RGGRGRGGGGGGRGSSGARGG--VGGRGGGGRGGGGGG 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,930,904
Number of Sequences: 27780
Number of extensions: 265672
Number of successful extensions: 887
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)