Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_J18
(897 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL354775-1|CAI12730.1| 276|Homo sapiens protein ( Human DNA seq... 42 0.004
BC044311-1|AAH44311.2| 399|Homo sapiens hypothetical protein LO... 32 3.2
BC040943-1|AAH40943.1| 498|Homo sapiens WAS protein family, mem... 32 3.2
AL096774-6|CAC18518.1| 498|Homo sapiens WAS protein family, mem... 32 3.2
AB026542-1|BAA81795.1| 498|Homo sapiens WASP-family protein pro... 32 3.2
X63522-1|CAA45087.1| 533|Homo sapiens retinoic acid X receptor ... 31 4.3
BT007280-1|AAP35944.1| 533|Homo sapiens retinoid X receptor, be... 31 4.3
BC001167-1|AAH01167.1| 533|Homo sapiens retinoid X receptor, be... 31 4.3
AL844527-9|CAI41836.2| 537|Homo sapiens retinoid X receptor, be... 31 4.3
AL844527-8|CAI41837.1| 533|Homo sapiens retinoid X receptor, be... 31 4.3
AL662824-21|CAI17612.2| 537|Homo sapiens retinoid X receptor, b... 31 4.3
AL662824-20|CAI17614.1| 533|Homo sapiens retinoid X receptor, b... 31 4.3
AL645940-7|CAI18064.2| 537|Homo sapiens retinoid X receptor, be... 31 4.3
AL645940-6|CAI18066.1| 533|Homo sapiens retinoid X receptor, be... 31 4.3
AL031228-14|CAI95622.1| 482|Homo sapiens retinoid X receptor, b... 31 4.3
AL031228-13|CAA20239.1| 533|Homo sapiens retinoid X receptor, b... 31 4.3
AF120161-1|AAD13794.1| 533|Homo sapiens retinoic X receptor bet... 31 4.3
AF065396-1|AAC18599.1| 533|Homo sapiens retinoic X receptor B p... 31 4.3
AB209244-1|BAD92481.1| 577|Homo sapiens retinoid X receptor, be... 31 4.3
M99061-1|AAC83410.1| 645|Homo sapiens epidermal cytokeratin 2 p... 31 5.7
AF019084-1|AAB81946.1| 645|Homo sapiens keratin 2e protein. 31 5.7
X98893-1|CAA67398.1| 589|Homo sapiens hTAFII68 protein. 31 7.5
U51334-1|AAC50932.1| 592|Homo sapiens putative RNA binding prot... 31 7.5
BC046099-1|AAH46099.2| 592|Homo sapiens TAF15 RNA polymerase II... 31 7.5
AY197697-1|AAO13485.1| 589|Homo sapiens TAF15 RNA polymerase II... 31 7.5
AB010067-2|BAA33812.1| 589|Homo sapiens RBP56/hTAFII68 protein. 31 7.5
AB010067-1|BAA33811.1| 592|Homo sapiens RBP56/hTAFII68 protein. 31 7.5
M84820-1|AAA60293.1| 533|Homo sapiens retinoid X receptor beta ... 30 9.9
BC035008-1|AAH35008.1| 652|Homo sapiens gametogenetin protein. 30 9.9
AK093032-1|BAC04025.1| 652|Homo sapiens protein ( Homo sapiens ... 30 9.9
AB208804-1|BAD92041.1| 1284|Homo sapiens Adapter-related protein... 30 9.9
>AL354775-1|CAI12730.1| 276|Homo sapiens protein ( Human DNA
sequence from clone RP11-223F20 on chromosome 13
Contains a novel heterogeneous nuclear ribonucleoprotein
family A protein and).
Length = 276
Score = 41.5 bits (93), Expect = 0.004
Identities = 25/82 (30%), Positives = 33/82 (40%)
Frame = -1
Query: 879 GXGGSGVXXGGFXXEXXPXLGAXXXXXXRXXKYXXXGGAYGGRPXXLPXKGEKRXGTGYS 700
G GG+ GG+ G+ ++ GG YGG P G GTGY
Sbjct: 135 GLGGNFGGRGGYGGGGGGSRGSYGRGDGGYNRFGRDGGNYGGGPGYSSRGGYGGGGTGYG 194
Query: 699 R*SGAGFGEQXGRNEGXFQGGN 634
G G+G G +G +GGN
Sbjct: 195 N-QGGGYGGGGGGYDGYNEGGN 215
>BC044311-1|AAH44311.2| 399|Homo sapiens hypothetical protein
LOC339344 protein.
Length = 399
Score = 31.9 bits (69), Expect = 3.2
Identities = 18/46 (39%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Frame = +2
Query: 641 PWXXPSXRPXCSPNPAPLYREYPVPXLFSPFXGSXXGL--PPXAPP 772
PW PS P P P RE P P P L PP APP
Sbjct: 181 PWARPSCTPQEGGCPRPKERESPPPSALQPVQLPRLALSPPPPAPP 226
>BC040943-1|AAH40943.1| 498|Homo sapiens WAS protein family, member
2 protein.
Length = 498
Score = 31.9 bits (69), Expect = 3.2
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = +2
Query: 635 FPPWXXPSXRPXCSPNPAPLYREYPVPXLFSPFXGSXXGLPPXAPP 772
FPP + P P PA Y P P L P G+ PP PP
Sbjct: 355 FPPHPDFAAPPPPPPPPAADYPTLPPPPLSQPTGGAPPPPPPPPPP 400
>AL096774-6|CAC18518.1| 498|Homo sapiens WAS protein family, member
2 protein.
Length = 498
Score = 31.9 bits (69), Expect = 3.2
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = +2
Query: 635 FPPWXXPSXRPXCSPNPAPLYREYPVPXLFSPFXGSXXGLPPXAPP 772
FPP + P P PA Y P P L P G+ PP PP
Sbjct: 355 FPPHPDFAAPPPPPPPPAADYPTLPPPPLSQPTGGAPPPPPPPPPP 400
>AB026542-1|BAA81795.1| 498|Homo sapiens WASP-family protein
protein.
Length = 498
Score = 31.9 bits (69), Expect = 3.2
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = +2
Query: 635 FPPWXXPSXRPXCSPNPAPLYREYPVPXLFSPFXGSXXGLPPXAPP 772
FPP + P P PA Y P P L P G+ PP PP
Sbjct: 355 FPPHPDFAAPPPPPPPPAADYPTLPPPPLSQPTGGAPPPPPPPPPP 400
>X63522-1|CAA45087.1| 533|Homo sapiens retinoic acid X receptor b
protein.
Length = 533
Score = 31.5 bits (68), Expect = 4.3
Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = +2
Query: 632 PFPPWXXPSXRPXCSPNPAPLYREYPVPXLFSPF------XGSXXGLPPXAPP 772
P PP PS +P P P+ P P L SPF GS GLPP APP
Sbjct: 104 PLPPSTAPSLGGSGAPPPPPM----PPPPLGSPFPVISSSMGS-PGLPPPAPP 151
>BT007280-1|AAP35944.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 31.5 bits (68), Expect = 4.3
Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = +2
Query: 632 PFPPWXXPSXRPXCSPNPAPLYREYPVPXLFSPF------XGSXXGLPPXAPP 772
P PP PS +P P P+ P P L SPF GS GLPP APP
Sbjct: 104 PLPPSTAPSLGGSGAPPPPPM----PPPPLGSPFPVISSSMGS-PGLPPPAPP 151
>BC001167-1|AAH01167.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 31.5 bits (68), Expect = 4.3
Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = +2
Query: 632 PFPPWXXPSXRPXCSPNPAPLYREYPVPXLFSPF------XGSXXGLPPXAPP 772
P PP PS +P P P+ P P L SPF GS GLPP APP
Sbjct: 104 PLPPSTAPSLGGSGAPPPPPM----PPPPLGSPFPVISSSMGS-PGLPPPAPP 151
>AL844527-9|CAI41836.2| 537|Homo sapiens retinoid X receptor, beta
protein.
Length = 537
Score = 31.5 bits (68), Expect = 4.3
Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = +2
Query: 632 PFPPWXXPSXRPXCSPNPAPLYREYPVPXLFSPF------XGSXXGLPPXAPP 772
P PP PS +P P P+ P P L SPF GS GLPP APP
Sbjct: 104 PLPPSTAPSLGGSGAPPPPPM----PPPPLGSPFPVISSSMGS-PGLPPPAPP 151
>AL844527-8|CAI41837.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 31.5 bits (68), Expect = 4.3
Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = +2
Query: 632 PFPPWXXPSXRPXCSPNPAPLYREYPVPXLFSPF------XGSXXGLPPXAPP 772
P PP PS +P P P+ P P L SPF GS GLPP APP
Sbjct: 104 PLPPSTAPSLGGSGAPPPPPM----PPPPLGSPFPVISSSMGS-PGLPPPAPP 151
>AL662824-21|CAI17612.2| 537|Homo sapiens retinoid X receptor, beta
protein.
Length = 537
Score = 31.5 bits (68), Expect = 4.3
Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = +2
Query: 632 PFPPWXXPSXRPXCSPNPAPLYREYPVPXLFSPF------XGSXXGLPPXAPP 772
P PP PS +P P P+ P P L SPF GS GLPP APP
Sbjct: 104 PLPPSTAPSLGGSGAPPPPPM----PPPPLGSPFPVISSSMGS-PGLPPPAPP 151
>AL662824-20|CAI17614.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 31.5 bits (68), Expect = 4.3
Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = +2
Query: 632 PFPPWXXPSXRPXCSPNPAPLYREYPVPXLFSPF------XGSXXGLPPXAPP 772
P PP PS +P P P+ P P L SPF GS GLPP APP
Sbjct: 104 PLPPSTAPSLGGSGAPPPPPM----PPPPLGSPFPVISSSMGS-PGLPPPAPP 151
>AL645940-7|CAI18064.2| 537|Homo sapiens retinoid X receptor, beta
protein.
Length = 537
Score = 31.5 bits (68), Expect = 4.3
Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = +2
Query: 632 PFPPWXXPSXRPXCSPNPAPLYREYPVPXLFSPF------XGSXXGLPPXAPP 772
P PP PS +P P P+ P P L SPF GS GLPP APP
Sbjct: 104 PLPPSTAPSLGGSGAPPPPPM----PPPPLGSPFPVISSSMGS-PGLPPPAPP 151
>AL645940-6|CAI18066.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 31.5 bits (68), Expect = 4.3
Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = +2
Query: 632 PFPPWXXPSXRPXCSPNPAPLYREYPVPXLFSPF------XGSXXGLPPXAPP 772
P PP PS +P P P+ P P L SPF GS GLPP APP
Sbjct: 104 PLPPSTAPSLGGSGAPPPPPM----PPPPLGSPFPVISSSMGS-PGLPPPAPP 151
>AL031228-14|CAI95622.1| 482|Homo sapiens retinoid X receptor, beta
protein.
Length = 482
Score = 31.5 bits (68), Expect = 4.3
Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = +2
Query: 632 PFPPWXXPSXRPXCSPNPAPLYREYPVPXLFSPF------XGSXXGLPPXAPP 772
P PP PS +P P P+ P P L SPF GS GLPP APP
Sbjct: 53 PLPPSTAPSLGGSGAPPPPPM----PPPPLGSPFPVISSSMGS-PGLPPPAPP 100
>AL031228-13|CAA20239.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 31.5 bits (68), Expect = 4.3
Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = +2
Query: 632 PFPPWXXPSXRPXCSPNPAPLYREYPVPXLFSPF------XGSXXGLPPXAPP 772
P PP PS +P P P+ P P L SPF GS GLPP APP
Sbjct: 104 PLPPSTAPSLGGSGAPPPPPM----PPPPLGSPFPVISSSMGS-PGLPPPAPP 151
>AF120161-1|AAD13794.1| 533|Homo sapiens retinoic X receptor beta
protein.
Length = 533
Score = 31.5 bits (68), Expect = 4.3
Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = +2
Query: 632 PFPPWXXPSXRPXCSPNPAPLYREYPVPXLFSPF------XGSXXGLPPXAPP 772
P PP PS +P P P+ P P L SPF GS GLPP APP
Sbjct: 104 PLPPSTAPSLGGSGAPPPPPM----PPPPLGSPFPVISSSMGS-PGLPPPAPP 151
>AF065396-1|AAC18599.1| 533|Homo sapiens retinoic X receptor B
protein.
Length = 533
Score = 31.5 bits (68), Expect = 4.3
Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = +2
Query: 632 PFPPWXXPSXRPXCSPNPAPLYREYPVPXLFSPF------XGSXXGLPPXAPP 772
P PP PS +P P P+ P P L SPF GS GLPP APP
Sbjct: 104 PLPPSTAPSLGGSGAPPPPPM----PPPPLGSPFPVISSSMGS-PGLPPPAPP 151
>AB209244-1|BAD92481.1| 577|Homo sapiens retinoid X receptor, beta
variant protein.
Length = 577
Score = 31.5 bits (68), Expect = 4.3
Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = +2
Query: 632 PFPPWXXPSXRPXCSPNPAPLYREYPVPXLFSPF------XGSXXGLPPXAPP 772
P PP PS +P P P+ P P L SPF GS GLPP APP
Sbjct: 144 PLPPSTAPSLGGSGAPPPPPM----PPPPLGSPFPVISSSMGS-PGLPPPAPP 191
>M99061-1|AAC83410.1| 645|Homo sapiens epidermal cytokeratin 2
protein.
Length = 645
Score = 31.1 bits (67), Expect = 5.7
Identities = 24/81 (29%), Positives = 29/81 (35%)
Frame = -1
Query: 879 GXGGSGVXXGGFXXEXXPXLGAXXXXXXRXXKYXXXGGAYGGRPXXLPXKGEKRXGTGYS 700
G GG G GGF LG GG +G G G+G+
Sbjct: 47 GGGGGGFGGGGFGSRSLVGLGGTKSISI---SVAGGGGGFGAAGGFGGRGGGFGGGSGFG 103
Query: 699 R*SGAGFGEQXGRNEGXFQGG 637
G+GFG G + G F GG
Sbjct: 104 --GGSGFGGGSGFSGGGFGGG 122
>AF019084-1|AAB81946.1| 645|Homo sapiens keratin 2e protein.
Length = 645
Score = 31.1 bits (67), Expect = 5.7
Identities = 24/81 (29%), Positives = 29/81 (35%)
Frame = -1
Query: 879 GXGGSGVXXGGFXXEXXPXLGAXXXXXXRXXKYXXXGGAYGGRPXXLPXKGEKRXGTGYS 700
G GG G GGF LG GG +G G G+G+
Sbjct: 47 GGGGGGFGGGGFGSRSLVGLGGTKSISI---SVAGGGGGFGAAGGFGGRGGGFGGGSGFG 103
Query: 699 R*SGAGFGEQXGRNEGXFQGG 637
G+GFG G + G F GG
Sbjct: 104 --GGSGFGGGSGFSGGGFGGG 122
>X98893-1|CAA67398.1| 589|Homo sapiens hTAFII68 protein.
Length = 589
Score = 30.7 bits (66), Expect = 7.5
Identities = 23/83 (27%), Positives = 29/83 (34%)
Frame = -1
Query: 879 GXGGSGVXXGGFXXEXXPXLGAXXXXXXRXXKYXXXGGAYGGRPXXLPXKGEKRXGTGYS 700
G GG G GG+ + GG YGG G++ G GY
Sbjct: 404 GRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDR--GGGYG 461
Query: 699 R*SGAGFGEQXGRNEGXFQGGNG 631
G G+G G G +GG G
Sbjct: 462 GDRGGGYGGDRGGGYGGDRGGYG 484
>U51334-1|AAC50932.1| 592|Homo sapiens putative RNA binding protein
RBP56 protein.
Length = 592
Score = 30.7 bits (66), Expect = 7.5
Identities = 23/83 (27%), Positives = 29/83 (34%)
Frame = -1
Query: 879 GXGGSGVXXGGFXXEXXPXLGAXXXXXXRXXKYXXXGGAYGGRPXXLPXKGEKRXGTGYS 700
G GG G GG+ + GG YGG G++ G GY
Sbjct: 407 GRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDR--GGGYG 464
Query: 699 R*SGAGFGEQXGRNEGXFQGGNG 631
G G+G G G +GG G
Sbjct: 465 GDRGGGYGGDRGGGYGGDRGGYG 487
>BC046099-1|AAH46099.2| 592|Homo sapiens TAF15 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 68kD
protein.
Length = 592
Score = 30.7 bits (66), Expect = 7.5
Identities = 23/83 (27%), Positives = 29/83 (34%)
Frame = -1
Query: 879 GXGGSGVXXGGFXXEXXPXLGAXXXXXXRXXKYXXXGGAYGGRPXXLPXKGEKRXGTGYS 700
G GG G GG+ + GG YGG G++ G GY
Sbjct: 407 GRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDR--GGGYG 464
Query: 699 R*SGAGFGEQXGRNEGXFQGGNG 631
G G+G G G +GG G
Sbjct: 465 GDRGGGYGGDRGGGYGGDRGGYG 487
>AY197697-1|AAO13485.1| 589|Homo sapiens TAF15 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 68kD
protein.
Length = 589
Score = 30.7 bits (66), Expect = 7.5
Identities = 23/83 (27%), Positives = 29/83 (34%)
Frame = -1
Query: 879 GXGGSGVXXGGFXXEXXPXLGAXXXXXXRXXKYXXXGGAYGGRPXXLPXKGEKRXGTGYS 700
G GG G GG+ + GG YGG G++ G GY
Sbjct: 404 GRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDR--GGGYG 461
Query: 699 R*SGAGFGEQXGRNEGXFQGGNG 631
G G+G G G +GG G
Sbjct: 462 GDRGGGYGGDRGGGYGGDRGGYG 484
>AB010067-2|BAA33812.1| 589|Homo sapiens RBP56/hTAFII68 protein.
Length = 589
Score = 30.7 bits (66), Expect = 7.5
Identities = 23/83 (27%), Positives = 29/83 (34%)
Frame = -1
Query: 879 GXGGSGVXXGGFXXEXXPXLGAXXXXXXRXXKYXXXGGAYGGRPXXLPXKGEKRXGTGYS 700
G GG G GG+ + GG YGG G++ G GY
Sbjct: 404 GRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDR--GGGYG 461
Query: 699 R*SGAGFGEQXGRNEGXFQGGNG 631
G G+G G G +GG G
Sbjct: 462 GDRGGGYGGDRGGGYGGDRGGYG 484
>AB010067-1|BAA33811.1| 592|Homo sapiens RBP56/hTAFII68 protein.
Length = 592
Score = 30.7 bits (66), Expect = 7.5
Identities = 23/83 (27%), Positives = 29/83 (34%)
Frame = -1
Query: 879 GXGGSGVXXGGFXXEXXPXLGAXXXXXXRXXKYXXXGGAYGGRPXXLPXKGEKRXGTGYS 700
G GG G GG+ + GG YGG G++ G GY
Sbjct: 407 GRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDR--GGGYG 464
Query: 699 R*SGAGFGEQXGRNEGXFQGGNG 631
G G+G G G +GG G
Sbjct: 465 GDRGGGYGGDRGGGYGGDRGGYG 487
>M84820-1|AAA60293.1| 533|Homo sapiens retinoid X receptor beta
protein.
Length = 533
Score = 30.3 bits (65), Expect = 9.9
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = +2
Query: 632 PFPPWXXPSXRPXCSPNPAPLYREYPVPXLFSPF------XGSXXGLPPXAPP 772
P PP P+ +P P P+ P P L SPF GS GLPP APP
Sbjct: 104 PLPPSTAPTLGGSGAPPPPPM----PPPPLGSPFPVISSSMGS-PGLPPPAPP 151
>BC035008-1|AAH35008.1| 652|Homo sapiens gametogenetin protein.
Length = 652
Score = 30.3 bits (65), Expect = 9.9
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +2
Query: 638 PPWXXPSXRPXCSPNPAPLYREYPVPXLFSPFXGSXXGLPPXAP 769
PP P SP+ PL E P P + P + PP AP
Sbjct: 57 PPGLMVPREPQASPSTLPLTLERPSPVMPPPEEAAAVSAPPPAP 100
>AK093032-1|BAC04025.1| 652|Homo sapiens protein ( Homo sapiens
cDNA FLJ35713 fis, clone TESTI1000019. ).
Length = 652
Score = 30.3 bits (65), Expect = 9.9
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +2
Query: 638 PPWXXPSXRPXCSPNPAPLYREYPVPXLFSPFXGSXXGLPPXAP 769
PP P SP+ PL E P P + P + PP AP
Sbjct: 57 PPGLMVPREPQASPSTLPLTLERPSPVMPPPEEAAAVSAPPPAP 100
>AB208804-1|BAD92041.1| 1284|Homo sapiens Adapter-related protein
complex 3 delta 1 subunit variant protein.
Length = 1284
Score = 30.3 bits (65), Expect = 9.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 725 RKGXEQGIPGKAGQGSGNRXGXTREXSRGETAW 627
R G ++G P AG G G G SRG++ W
Sbjct: 34 RSGRQRGAPRAAGTGPGPPHGAQPRASRGKSPW 66
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,191,425
Number of Sequences: 237096
Number of extensions: 2146095
Number of successful extensions: 6912
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 6191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6798
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11548247776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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