Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_J16
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    30   0.37 
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    29   1.1  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    28   2.0  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    27   2.6  
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    27   3.5  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   4.6  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    26   6.1  
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr...    26   6.1  
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po...    26   8.1  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    26   8.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   8.1  
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    26   8.1  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
 Frame = -2

Query: 500 TPSIMLSLMLSP*VKRRTLITTCTMMITSKKIAYVTTMQ*LSRIAPQHPKNAITNITAPT 321
           +PS+ LS   +  +   +     T++  S K    T        A   P+N  T IT+PT
Sbjct: 320 SPSVALSTSSTTTITNASTPAANTIISRSSKPTDTTNS---ISFANTTPENTSTQITSPT 376

Query: 320 TMKIHGP-TARWVFSKS--LTMVQFIRNATPIPTSSRPRSAT 204
            +    P T+  V + S  +T    +  +TPI +SS   S+T
Sbjct: 377 AVNSSTPITSSSVLNSSTPITSSSILNTSTPITSSSVLNSST 418


>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 312 LHSRRGCNVRDRVLGMLWSDTRESLHGRHVRNLFAGDHH 428
           L SRR  N + +V    WS+  E +H +  RNLF  + H
Sbjct: 12  LFSRRFPNWKRKVQTDSWSNVPEHIHSKIGRNLFQKEGH 50


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 495 IHNALL-DALAVGEEEDADHHLHNDDHQQKD 406
           +H+ +L D LA     D D  L  D+H QKD
Sbjct: 56  LHDTILPDVLAASYRHDIDTALSTDEHTQKD 86


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +3

Query: 579 SSNAAVTLALSTTGQFTFAPSPVASTKSILSNLRPATNXPSTP 707
           S N    LA +   Q   AP  +  TKS   NL P +N PS P
Sbjct: 226 SMNEMQLLASAAANQLDAAPR-ITPTKSSGVNLMPLSNAPSPP 267


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
 Frame = -2

Query: 446 LITTCTMMITSKKIAYVTTMQ*LSRIAPQHPKNAITNITAPTTMKIHGPTAR---WVFSK 276
           L   C    + K +A +T  Q LSR+   H KN +     P    I  P++R    V+  
Sbjct: 95  LFEWCGRRFSVKTVA-MTAKQMLSRVQTIHEKNLVYRDIKPDNFLIGRPSSRNANMVYMV 153

Query: 275 SLTMVQFIRNATP---IPTSSRPR-SATTRLKKNSTY 177
              M ++ R+      IP S R   S T R    +T+
Sbjct: 154 DFGMAKYYRDPKTKQHIPYSERKSLSGTARYMSINTH 190


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 162 NEFCEICAILLQPGRRAPRPAASGDWSSVPDELDHGQR 275
           +E  E+    L+P  RAPRP+ S    S   E+ H  R
Sbjct: 77  DEKLEVDFAFLEPPERAPRPSISTRSRSQSPEVQHRDR 114


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -1

Query: 453 EDADHHLHNDDHQQKDCVRDDHAVTLAYRSTASQERDHEHYSPDDY 316
           E+ +    N + Q+     DDH     +    SQE  HEH    D+
Sbjct: 505 EEFEEEKDNVEAQKMGYTNDDHVSQHEHTHENSQEHHHEHNHNHDH 550


>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 208

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = -1

Query: 423 DHQQKDCVRDDHAVTLAYRSTASQER 346
           D   KD V DD  VTL    TA QER
Sbjct: 44  DFLTKDVVVDDKLVTLQLWDTAGQER 69


>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 374 RIAPQHPKNAITNITAPTTMKIHG 303
           RI P  P N + NIT P+T+  HG
Sbjct: 175 RIFP--PTNLVANITLPSTLHPHG 196


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 462 GEEEDADHHLHNDDHQQKDCVRDDH 388
           G ++   HH H+ DH   D    DH
Sbjct: 10  GSDDSTHHHTHDYDHHNHDHHGHDH 34


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 579 SSNAAVTLALSTTGQFTFAPSPVASTKSILSNLRPATNXPSTPAN 713
           +S    T   +T+    +  +PV S+   +S+  P T+ P T  N
Sbjct: 487 TSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 531



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 579 SSNAAVTLALSTTGQFTFAPSPVASTKSILSNLRPATNXPSTPAN 713
           +S    T   +T+    +  +PV S+   +S+  P T+ P T  N
Sbjct: 546 TSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 590


>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 275 SLTMVQFIRNATPIPTSSRPRSATTRLKKNSTYFTKLVPHPML 147
           SL + +F +  T +    +P S T  +  NS+ FTK  P P L
Sbjct: 218 SLIVEKFAQRNT-LSDMDQPASLTAYVDANSSSFTKSKPEPSL 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,851,616
Number of Sequences: 5004
Number of extensions: 54389
Number of successful extensions: 180
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)