Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_J16
(873 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0458 + 14280953-14281866,14281964-14282912 33 0.30
03_06_0133 - 31906305-31906582,31906820-31907105,31907442-319075... 31 0.91
02_02_0310 - 8842286-8843314 31 1.6
10_06_0171 + 11466934-11466990,11467073-11468312,11468450-114685... 30 2.1
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275... 30 2.1
10_01_0274 - 2901033-2901778,2902475-2902634 29 3.7
03_04_0035 - 16685674-16686376,16686594-16686640 29 6.4
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970... 29 6.4
09_04_0532 + 18386593-18386722,18386826-18386900,18387098-183875... 28 8.5
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 28 8.5
02_04_0260 - 21350060-21350269,21350544-21350604,21350834-213509... 28 8.5
01_06_0288 - 28228673-28228744,28228866-28229071,28229316-282295... 28 8.5
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 33.1 bits (72), Expect = 0.30
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Frame = +3
Query: 633 APSPVAS----TKSILSNLRPATNXPSTPANSRLPAPXIGXLYXKWNQPIXRGCPPXXL- 797
APSP +S T S + P+ S+P++S P + L QP PP L
Sbjct: 30 APSPPSSNSTPTSSTTPTVPPSLTTTSSPSSSPSSPPPLPPL-----QPTPPPLPPTTLS 84
Query: 798 CXGXRTPFPPSSPIPXKLDXXVPP 869
C TP PP SP +PP
Sbjct: 85 CSSHPTPPPPPSPTTSPSASSLPP 108
>03_06_0133 -
31906305-31906582,31906820-31907105,31907442-31907566,
31907645-31907759,31907852-31908485,31911425-31911555,
31912308-31912397,31912440-31912486,31913707-31913761,
31914576-31914908,31915278-31915337,31915427-31915618,
31916149-31916220,31916307-31916435
Length = 848
Score = 31.5 bits (68), Expect = 0.91
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +2
Query: 500 SACHSKRDLTLTQTXPPRLFSLNCKRQFECCGNTGAINYGPVHVCPESCCXHK 658
+A + K D+ +T P LF GN G + P+H+ E+ C HK
Sbjct: 52 AAKNVKNDI-MTDPTPQLLFRHGASANVRTVGNAGTEDLLPLHIAVENTCMHK 103
>02_02_0310 - 8842286-8843314
Length = 342
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -1
Query: 441 HHLHNDDHQQKDCVRDDHAVTLAYRSTA-SQERDHEHYSPDDYEDPRTDSKM 289
HH H+D++++ + + D A R + + R H H+ DD+E + M
Sbjct: 194 HHHHHDENEEDEHEQADEASPAVERLISFHRRRHHHHHHEDDHEQREEGAPM 245
>10_06_0171 +
11466934-11466990,11467073-11468312,11468450-11468596,
11469650-11470140
Length = 644
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 477 DALAVGEEEDADHHLHNDDHQQKDCVRDDHAV 382
D + EE+D DHH H+ H D +HA+
Sbjct: 320 DTFRIAEEDDDDHHHHHHYHGDADDDDGEHAM 351
>05_01_0351 +
2750253-2751042,2751951-2751958,2752122-2752149,
2754692-2754775,2755780-2757548
Length = 892
Score = 30.3 bits (65), Expect = 2.1
Identities = 31/107 (28%), Positives = 39/107 (36%), Gaps = 7/107 (6%)
Frame = +3
Query: 570 ANDSSNAAVTLALSTTGQFTFAPSPV------ASTKSILSNLRPATNXPSTPANSRLPAP 731
A+ +AA LA S T FAP P+ A + RPA P P LP P
Sbjct: 684 ASGGGDAAAPLAKSATKSVGFAPPPLQPPARPAQHPHLQPPARPAQQPPRPPVTQPLPPP 743
Query: 732 XIGXLYXKWNQPIXRGCPPXXLCXGXRTPFPPSSPIPXKL-DXXVPP 869
+ + QP P L P PP P P + +PP
Sbjct: 744 PPLHQHQPY-QPRHTDALPLPL------PLPPPPPPPFSVQQQQLPP 783
>10_01_0274 - 2901033-2901778,2902475-2902634
Length = 301
Score = 29.5 bits (63), Expect = 3.7
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Frame = +3
Query: 636 PSPVASTKSILSNLRPATNXPSTPANSRLPAPXIGXLYXKWNQPIXRGCPPXXL----CX 803
PSPV T + + P PSTP PAP + QP CPP C
Sbjct: 176 PSPVYGTPAPGCSCSP----PSTPPGYGQPAPECPPADPGYGQPAPE-CPPPPTPAPECG 230
Query: 804 GXRTPFPPSSP 836
+PPS+P
Sbjct: 231 QPAPEYPPSTP 241
>03_04_0035 - 16685674-16686376,16686594-16686640
Length = 249
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 486 ALLDALAVGEEEDADHHLHNDDHQQK 409
ALL L E++D DHH H+ H +
Sbjct: 224 ALLGQLEAEEDDDGDHHHHHHHHHHQ 249
>03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,
9700145-9700235,9700698-9700759,9701256-9702962,
9703789-9703870,9703972-9704057,9704855-9704968,
9705113-9705163,9705261-9705358,9707084-9707546
Length = 1367
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -1
Query: 477 DALAVGEEEDADHHLHNDDHQQKDCVRDDHAVTLAYRSTASQERDHEHYSPDD 319
DA G E+A H H C RDD V + +S+ +D++ DD
Sbjct: 1209 DAKNCGSGEEAGDHDSERTHGTLPCSRDDEPVHVPSDFGSSKSQDNQRDEDDD 1261
>09_04_0532 +
18386593-18386722,18386826-18386900,18387098-18387510,
18387682-18387688,18387944-18388005,18388046-18388341,
18388456-18388813,18388916-18389491,18389956-18390231
Length = 730
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 640 LGANVNWPVVDSASVTAAFELSFA-IQRKQP 551
L A +W VV++AS AFE S A + RK P
Sbjct: 83 LSATEDWQVVEAASKNPAFEKSDASVSRKDP 113
>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 28.3 bits (60), Expect = 8.5
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = -1
Query: 468 AVGEEEDADHHLH--NDDHQQKDC 403
++ EE +DHH H N++H+ +DC
Sbjct: 969 SISIEESSDHHEHHHNEEHKAEDC 992
>02_04_0260 -
21350060-21350269,21350544-21350604,21350834-21350901,
21351274-21351483,21351684-21351724,21351923-21351972,
21352084-21352172,21352265-21352339,21352539-21352656,
21352689-21352771,21352854-21352970,21353857-21354074,
21354184-21354241,21354356-21354508
Length = 516
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -2
Query: 362 QHPKNAITNITAPTTMKIHGPTARWVFSKSLTMVQFIRNATPIP 231
QH +N I MK H P +W+ L+ Q I++ P
Sbjct: 187 QHWENKIQASDENGMMKEHSPLGKWIIGMKLSGPQMIKHVQEFP 230
>01_06_0288 -
28228673-28228744,28228866-28229071,28229316-28229554,
28229649-28229705,28229787-28229873,28229963-28230507,
28231574-28231714
Length = 448
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = +3
Query: 432 ASGDQRPPLHLRREH---QGEHYGWRRR 506
A+ + PL LRRE +GE GWRRR
Sbjct: 3 AAAREEQPLLLRREEGEEEGEEVGWRRR 30
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,533,593
Number of Sequences: 37544
Number of extensions: 439684
Number of successful extensions: 1477
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1473
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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