Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_J16
         (873 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    61   1e-11
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   4.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   4.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.9  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 61.3 bits (142), Expect = 1e-11
 Identities = 30/85 (35%), Positives = 41/85 (48%)
 Frame = +1

Query: 151 MGCGTSFVKYXXXXXXXXXXXXXXXXXXXXXXXXMNWTMVKDLLKTHLAVGPWIFIVVGA 330
           M CG   +KY                        +    V   ++T LA      IV+G+
Sbjct: 1   MSCGMGMIKYLLFIFNFVFAVCGLGILTLGVLIHLQILGVSKQIETGLAFPSITLIVLGS 60

Query: 331 VMFVIAFLGCCGAIRESHCMVVTYA 405
           ++FVI+F GCCGAIRESHCM +T+A
Sbjct: 61  IIFVISFFGCCGAIRESHCMTITFA 85


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +3

Query: 681 PATNXPSTPANSRLPAPXIGXLYXKWNQP 767
           P T  PS P N  +       ++  WN P
Sbjct: 313 PCTQPPSAPQNLTVNFVDQSTVFLSWNAP 341


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 78  TAFSVHGVNTTSXLKXFP 25
           +A S+ GVN+TS  K FP
Sbjct: 68  SAGSIPGVNSTSENKTFP 85


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 78  TAFSVHGVNTTSXLKXFP 25
           +A S+ GVN+TS  K FP
Sbjct: 68  SAGSIPGVNSTSENKTFP 85


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 408  LFAGDHHCASGDQRPPLHLRREHQGEHYGWRRR 506
            L+       + DQ+P  +L  +   + YG RR+
Sbjct: 963  LYKSSESSCNPDQKPTEYLLEDSMKQQYGKRRK 995


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,802
Number of Sequences: 438
Number of extensions: 4577
Number of successful extensions: 26
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)