Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_J14
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ...    29   1.1  
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce...    28   1.9  

>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
           kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 474 NAATYLEI*VLKSQYSYNGYPTPSSRSALLLHXXXXXXXXTYPCGFTRR 620
           +AA + EI +LK    YN Y  P+++ AL  H        T+P    R+
Sbjct: 259 SAAGHEEIDLLKMMLDYNPYRRPTAQQALEHHYFSALPKPTHPSLLPRK 307


>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 63  FAMDKWAGFLFCLSALCFTCKLFC 134
           F + +W  FL  ++  CF C L C
Sbjct: 185 FVIQRWQWFLLAVAIQCFNCVLAC 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,185,943
Number of Sequences: 5004
Number of extensions: 59598
Number of successful extensions: 104
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)