Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_J13
(863 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.040
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.28
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 2.0
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 28 2.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.4
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.4
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 27 4.5
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 26 7.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 7.9
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.5 bits (73), Expect = 0.040
Identities = 22/66 (33%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Frame = +2
Query: 629 PYXGPPXXXPP-PPXLPXPXPXFXPAXXPRXSPXPXTRAPIXGFPXXXSPXXTPXXQKTP 805
P PP P PP LP P P P P P + API P P P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPS-APIAPPLPAGMPAAPPLPPAAP 474
Query: 806 XXPTAP 823
P AP
Sbjct: 475 APPPAP 480
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 30.7 bits (66), Expect = 0.28
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +2
Query: 641 PPXXXPPPPXLPXPXPXFXPAXXPRXSPXPXTRAP 745
PP PP P +P P P P + P P + P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPP 173
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +2
Query: 629 PYXGPPXXXPPPPXLPXPXPXFXPAXXPRXSPXPXTRAPIXGFPXXXSP 775
P G P PP P P P P S P P G P P
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +2
Query: 641 PPXXXPPPPXLPXPXPXFXPAXXPRXSPXP 730
PP PPPP P P F P P P P
Sbjct: 5 PPGNPPPPP----PPPGFEPPSQPPPPPPP 30
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Frame = -3
Query: 786 GVXXGXXXXGXPXIGARVXGXGDXRGXXAGXKXGXG--XGXSGGGGXXXGG 640
G G G GAR G G RG G G G SGG G GG
Sbjct: 20 GFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +2
Query: 629 PYXGPPXXXPPPPXLPXPXPXFXPAXXPRXSPXPXTRAP 745
P PP PPP P P P+ P P P + AP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPP--PPLPASSAP 1741
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.1 bits (57), Expect = 3.4
Identities = 20/62 (32%), Positives = 20/62 (32%)
Frame = -3
Query: 822 GAVGXXGVFWXXGVXXGXXXXGXPXIGARVXGXGDXRGXXAGXKXGXGXGXSGGGGXXXG 643
G G G F G G G G G G G G G G GG G G
Sbjct: 205 GGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLG-GFGGGPGGFGG 263
Query: 642 GP 637
GP
Sbjct: 264 GP 265
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -2
Query: 106 DKYFNRFTVRLPCTSVRXNKQILRIPY 26
+KY RF V PC V N I PY
Sbjct: 144 EKYLQRFQVLRPCVEVVANYMIEHDPY 170
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 7.9
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -2
Query: 100 YFNRFTVRLPCTSVRXNKQILRIPYSEXG 14
+FN ++ + ++R K+I PY E G
Sbjct: 3 HFNELSIEIESKNLRSAKKIFHCPYEECG 31
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 7.9
Identities = 19/56 (33%), Positives = 20/56 (35%)
Frame = +2
Query: 656 PPPPXLPXPXPXFXPAXXPRXSPXPXTRAPIXGFPXXXSPXXTPXXQKTPXXPTAP 823
PPPP + P P PA P P API G P P P P P
Sbjct: 734 PPPPAVIVPTP--APAPIPVPPP-----APIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,009,657
Number of Sequences: 5004
Number of extensions: 27412
Number of successful extensions: 90
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -