Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_J04
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    32   0.086
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    26   7.5  
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    25   9.9  
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom...    25   9.9  

>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
            Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 32.3 bits (70), Expect = 0.086
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
 Frame = +3

Query: 186  DNGKISFSGKDYTYIESTESFYKIHTLYKKW-VDAKKTCEMEGATFFYPDDKFEFDAVTT 362
            +N  I+FS  D   +   E   +I T +K W +  K+      + FF P+D  E +    
Sbjct: 834  NNWDINFSDDDLKLMNEEEIMEQIET-FKAWSMKFKEKSSGNPSYFFSPEDTEEKELWNN 892

Query: 363  YWNTSQPFEWISIGISSQMXKGVFETVDGVS 455
             +    P      G  S + KG+ ET D +S
Sbjct: 893  LFEDWYPNRARDPGTLSHLVKGLKETADHLS 923


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 241 RAFTKFTRYIRNGWTLRRL-AKWRGLLSFTLMTSLNSML*PLIGTRHNPSN 390
           +A+TK   +IRNG +     ++W+GL + TL  S  S +       H PSN
Sbjct: 435 KAWTK--HFIRNGESAAYAWSQWKGLYNLTLNMSYISFVMAAWKLYHLPSN 483


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +2

Query: 566 GXNLSHFXQXNPGFXXXEGNWEFLXP 643
           G    +  +   GF    GNW+FL P
Sbjct: 320 GPKQEYIAELTDGFGCQRGNWKFLFP 345


>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 511 VMRXVGXARVPICXTRPIMETPSTVSKTPLXICDEIPILIH 389
           V++ V  AR  +   +PI E PS + ++PL +  ++  LIH
Sbjct: 22  VLKIVVTARKCLDDMKPI-ELPSELVESPLSMLKDVATLIH 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,791
Number of Sequences: 5004
Number of extensions: 46488
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)