Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_J02
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    31   0.21 
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    28   1.9  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    27   4.5  
SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr...    27   4.5  
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    26   5.9  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    26   5.9  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    26   7.8  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    26   7.8  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   7.8  

>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 23/92 (25%), Positives = 38/92 (41%)
 Frame = +2

Query: 245 QGDNVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPXNNEASIEHSHHTVDIGLDQP 424
           + +  P+AP      + P  +D   L P  +  R V N   + + I  SH      +DQ 
Sbjct: 83  EANESPKAPRNDYLQVTPKTVDKSLLGPTPQLSRRVLNLLEDMSPIADSH------VDQI 136

Query: 425 IESHRNTXDLRFLYPRGKLPVPTLPPFNPKPI 520
            +   NT ++          +PT P  NP+P+
Sbjct: 137 SDIKHNTSEI------SSTMIPTTPSKNPEPV 162


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
 Frame = +3

Query: 408 LDLTSRSRATVTQXTCGFCTLEGNCLFQRFLRLTPSQYILI-----WETRYRRHASXDXD 572
           +DL S ++         F + E NCL+   + L P  Y        W    RRH S +  
Sbjct: 246 IDLLSSTKVAAKSQFTLFGSRETNCLYYAVIYLAPGDYHRFHSPTDWVVERRRHFSGELF 305

Query: 573 XLRPY 587
            + P+
Sbjct: 306 SVSPF 310


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +2

Query: 290  ILPSKIDDVQLDPNRRYVRSVTNPXNNEASIEHSHHTVDIGLDQPIESHRNTXDLRFLYP 469
            +LPS + D  L      +R   +   N  S++H     +I     +  HR     + + P
Sbjct: 2310 VLPSDLRDELLFQEAVQMRLFDHATRNNNSVDHEVEMEEIDQGGTVSEHRE----KSVKP 2365

Query: 470  RGKLPVPTL 496
              K+PVP L
Sbjct: 2366 VKKIPVPNL 2374


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +2

Query: 353 TNPXNNEA-SIEHSHHTVDIGLDQPIESHRNTXDLRFLYPRGKLPVPTLPPFN 508
           TN   NE  S    H T+ +G D+ + +         +YP  K+   TLP  N
Sbjct: 446 TNYTANEVVSDVFGHRTLTVGADKTLTASMTNGYPLIMYPHSKMSGFTLPTVN 498


>SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 179

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 435 TVTQXTCGFCTLEGNCLFQRFLRLTPSQYILIWETRYRRHAS 560
           T T   C  CTL G C+  R  R  P ++ +  + +   HAS
Sbjct: 103 TPTIPHCSMCTLIGLCIRVRLERCLPPRFHVDVKVKKGTHAS 144


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -3

Query: 251 HLDTAIAVPGQLVALYVLSGAVLAVA*RSAG*TSGTK---PEQRTAPELN 111
           H D  IAVPG L+ +       L  A R  G   G+K   PE  T  E+N
Sbjct: 305 HNDLKIAVPGGLIGVGTTVDPTLCRADRLVGQVLGSKGNLPEVYTELEIN 354


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 181 ANTAPDNTYSATSWPGTAMAVSR*QCSSCAKYRRPSD 291
           A+    N+ S+ ++   A A+SR +CS C K ++  D
Sbjct: 317 ASEVNPNSTSSVTFSDFAAAISRSRCSRCKKSKKGCD 353


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
 Frame = +2

Query: 293 LPSKIDDVQLDPN--RRYVRSVTNPXNNEASIEHSHHTVDIGLDQPIESHRNTXDLRFLY 466
           LP + +   L+ N  R Y    TN  +N  +   +       L    ES  N      +Y
Sbjct: 395 LPGEANFQSLNQNNVRNYPFYQTNQGSNPPAKRFTQEPPSSSLYSLSESSINYSTQSPMY 454

Query: 467 PRGKLPVPTLPPFNPKPIYID 529
                P P+ PPF+  PIY D
Sbjct: 455 YNYNYPQPSFPPFH--PIYND 473


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +2

Query: 389 SHHTVDIGLDQPIESHRNTXDLRFLYPRGKLPVPTLPPFNPKPIYIDMGNPL 544
           +H+T+  GL  P ESH    +  F    GK  V ++P  N  P + D G P+
Sbjct: 121 NHYTIVTGL-YP-ESHGIVSNNFFDPVTGKQFVNSMPECNKDPTWWDKGEPI 170


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +2

Query: 245 QGDNVPRAPSTADHPILPSKIDDVQLD-PNRRYVRSVTNPXNNEA 376
           Q   VPR PS  D P L S+      D P+   V  V NP ++ A
Sbjct: 95  QAQPVPRRPSLFDRPNLVSRSSSRLGDSPSLSPVAQVANPIHHTA 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,106,700
Number of Sequences: 5004
Number of extensions: 60076
Number of successful extensions: 175
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)