Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_I24
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    32   0.092
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    31   0.28 
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    27   4.6  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    26   6.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    23   7.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   8.0  

>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 32.3 bits (70), Expect = 0.092
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +2

Query: 650 PVSEPXLALRGPPXSTGILGDGPSXLSQWTM*PPGVRPH 766
           P  EP L  RG P      G  PS L+Q  + PP VRP+
Sbjct: 108 PPKEPALPSRGTPSLPSRPGSRPSVLNQEQVPPPPVRPN 146


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
 Frame = +1

Query: 202 ALIASSVMALYRVPLHR---MKTARTHFHEVGTELELLRL--KYDVTGPSPEPLSNYLDA 366
           AL AS   A   VP  R   +    + +  V  +LE  ++  K D +G     L  Y DA
Sbjct: 15  ALQASVASAYSEVPGKRSVVLNLQHSQYDHVARKLERTKVLNKRDSSGYPVLDLE-YTDA 73

Query: 367 Q-YYGVISIGTPPQSFKVVFDTGSSNLWVPSK 459
             Y+  +++G+  + + +  DTGS   WV +K
Sbjct: 74  GGYFANLTLGSNERVYSLTLDTGSPYTWVTAK 105


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 462 LFGRHPEVGGSGVEYHLERLRRRADTDHSVVLSIK 358
           +FG + E GG G     +R RR +D  H   +S++
Sbjct: 95  MFGMNFEAGGPGKNVPRDRKRRGSDVIHDYEISLE 129


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 175 MGKISLFFLALIASSVMALYRVPLHRMKTARTH 273
           MGK+S+ + A IAS+ + ++  P +R      H
Sbjct: 1   MGKLSMLYNAAIASTFVKVFLFPSYRSTDFEVH 33


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 22.6 bits (46), Expect(2) = 7.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 718 RPIPEDPRRTWRPTKGKPGLRHGXRRTSGAAP*APP 611
           RP P  P    R  +GKP + +G   +S   P  PP
Sbjct: 310 RPPPPPPPS--RRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 21.4 bits (43), Expect(2) = 7.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 631 AAP*APPTVTSSVERKPGEAARSRTVS 551
           A P  PP    S  R+P   + SR VS
Sbjct: 360 APPPPPPRSAPSTGRQPPPLSSSRAVS 386


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -2

Query: 673 GKPGLRH-GXRRTSGAAP*APPTVTSSVERKPGEAARSR 560
           G P LRH G    S A P AP   T   E +P  +A  R
Sbjct: 108 GMPKLRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPPR 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,358,498
Number of Sequences: 5004
Number of extensions: 69090
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)