Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_I22
(900 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1219 + 27096477-27096590,27096704-27097078 31 1.6
09_04_0249 + 16070331-16070828 30 2.9
07_03_0560 + 19479597-19480667 29 3.8
04_04_1645 + 35024237-35024977 25 4.8
05_01_0543 - 4733239-4733704,4733805-4734190 25 6.1
02_02_0444 + 10340927-10341063,10341157-10341241,10341480-103415... 29 6.7
04_03_0960 - 21257219-21257953 23 8.1
08_02_0602 + 19183549-19184919 23 9.9
07_03_1136 + 24218601-24218734,24218769-24219906 23 9.9
06_01_0120 - 926226-926289,926821-926887,927122-927170,927257-92... 24 10.0
>12_02_1219 + 27096477-27096590,27096704-27097078
Length = 162
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 897 GGGXXVGGGXREGRPQKAKGXFPGGXGXXXFNGG 796
GGG GGG G Q+ +G + GG G GG
Sbjct: 107 GGGGGYGGGGGGGYGQRREGGYGGGGGYGGGRGG 140
>09_04_0249 + 16070331-16070828
Length = 165
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 529 GGGGGGGXXXXCTINLFHH 473
GGGGGGG C + LF H
Sbjct: 123 GGGGGGGTVVGCEVVLFEH 141
>07_03_0560 + 19479597-19480667
Length = 356
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -1
Query: 897 GGGXXVGGGXREGRPQKAKGXFPGGXGXXXFNGG 796
GGG +GGG G A G F GG G GG
Sbjct: 245 GGGGGMGGGGGGGMGGGAGGGFGGGAGGGAGQGG 278
>04_04_1645 + 35024237-35024977
Length = 246
Score = 24.6 bits (51), Expect(2) = 4.8
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 529 GGGGGGGXXXXCTIN 485
GGGGGGG C+++
Sbjct: 13 GGGGGGGGNDACSLS 27
Score = 23.0 bits (47), Expect(2) = 4.8
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 535 FXGGGGGGG 509
F GGGGGGG
Sbjct: 10 FLGGGGGGG 18
>05_01_0543 - 4733239-4733704,4733805-4734190
Length = 283
Score = 25.0 bits (52), Expect(2) = 6.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 529 GGGGGGGXXXXCTINLFH 476
GGGGGGG T+ L H
Sbjct: 7 GGGGGGGGDGETTVVLAH 24
Score = 22.2 bits (45), Expect(2) = 6.1
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -3
Query: 541 RXFXGGGGGGG 509
R GGGGGGG
Sbjct: 4 RVLGGGGGGGG 14
>02_02_0444 +
10340927-10341063,10341157-10341241,10341480-10341537,
10343738-10345885,10345943-10346388
Length = 957
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 894 GGXXVGGGXREGRPQKAKGXFPGGXGXXXFNGG 796
GG VGGG G + G GG G ++GG
Sbjct: 810 GGDVVGGGLNGGGEELGGGLDEGGGGDWLYDGG 842
>04_03_0960 - 21257219-21257953
Length = 244
Score = 23.4 bits (48), Expect(2) = 8.1
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -3
Query: 568 PSXKGDXXXRXFXGGGGGGG 509
PS G GGGGGGG
Sbjct: 200 PSPSGSGSGGAGGGGGGGGG 219
Score = 23.4 bits (48), Expect(2) = 8.1
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 529 GGGGGGGXXXXCTINLFH 476
GGGGGGG LFH
Sbjct: 211 GGGGGGGGGGAPVRPLFH 228
>08_02_0602 + 19183549-19184919
Length = 456
Score = 23.4 bits (48), Expect(2) = 9.9
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -3
Query: 589 SGXGXNXPSXKGDXXXRXFXGGGGGGG 509
SG G + G GGGGGGG
Sbjct: 53 SGSGGSHRGASGGGSGGGGGGGGGGGG 79
Score = 23.0 bits (47), Expect(2) = 9.9
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 529 GGGGGGGXXXXC 494
GGGGGGG C
Sbjct: 77 GGGGGGGTNQAC 88
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 23.4 bits (48), Expect(2) = 9.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 529 GGGGGGGXXXXCTINL 482
GGGGGGG T++L
Sbjct: 319 GGGGGGGGEIAGTVDL 334
Score = 23.0 bits (47), Expect(2) = 9.9
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 535 FXGGGGGGG 509
F GGGGGGG
Sbjct: 316 FSGGGGGGG 324
>06_01_0120 -
926226-926289,926821-926887,927122-927170,927257-927313,
927826-927897,928145-928236,928331-928403,928870-928944,
929207-929314,929372-929422,929834-929959,930324-930362,
930452-930535,931018-931109,931217-931300,931410-931524
Length = 415
Score = 24.2 bits (50), Expect(2) = 10.0
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -3
Query: 586 GXGXNXPSXKGDXXXRXFXGGGGGGG 509
G G G+ F GGGGGGG
Sbjct: 152 GPGGAYEGGFGNPFEDIFGGGGGGGG 177
Score = 22.2 bits (45), Expect(2) = 10.0
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -3
Query: 529 GGGGGGGXXXXCTINLF 479
GGGGGGG N+F
Sbjct: 170 GGGGGGGGMNDFFRNIF 186
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,604,943
Number of Sequences: 37544
Number of extensions: 336895
Number of successful extensions: 6332
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5428
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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