Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_I22
         (900 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73103-6|CAE17680.1|   55|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical pr...    29   6.0  
AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen prot...    23   7.0  

>Z73103-6|CAE17680.1|   55|Caenorhabditis elegans Hypothetical
           protein C08F8.9 protein.
          Length = 55

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 160 VKDFYYXPFKWSLXKSVGFFTVGVVIA 240
           V   Y  PF WS+ K V  F VGVV+A
Sbjct: 18  VNTVYNDPFFWSVFKGVIGFGVGVVVA 44


>Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical
           protein C18D11.4 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
 Frame = -1

Query: 897 GGGXXVGGGXREGRPQKAKGXFPGGXGXXXF---NGGKNPSHR 778
           GG    GGG R G P +  G   GG G        GG  P  R
Sbjct: 224 GGDRYGGGGGRRGSPDRRGGFRSGGGGGGYMRSGGGGGGPDRR 266


>AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen protein
           103 protein.
          Length = 371

 Score = 23.4 bits (48), Expect(2) = 7.0
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -3

Query: 586 GXGXNXPSXKGDXXXRXFXGGGGGGG 509
           G G       G      + GGGGGGG
Sbjct: 104 GYGGGHGGGHGGAVGGGYGGGGGGGG 129



 Score = 23.4 bits (48), Expect(2) = 7.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 529 GGGGGGGXXXXCT 491
           GGGGGGG    C+
Sbjct: 122 GGGGGGGGGCQCS 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,151,087
Number of Sequences: 27780
Number of extensions: 243357
Number of successful extensions: 1191
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)