Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_I19
         (836 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0219 - 28474661-28475146,28475979-28476644                       29   4.6  
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542...    28   8.0  

>05_07_0219 - 28474661-28475146,28475979-28476644
          Length = 383

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 763 PXATLXPPPXVTX*XGPXXPPXP 831
           P AT+ PPP VT    P  PP P
Sbjct: 180 PPATMIPPPTVTATITPLWPPPP 202


>03_02_0071 +
           5425722-5427154,5427259-5427464,5428445-5428686,
           5428788-5429570
          Length = 887

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +2

Query: 737 PXKILTXAXPXPHXXPPPXLPXEXGLXLPPXP 832
           P K+ T   P P   PPP +P    L  P  P
Sbjct: 364 PPKLNTAPKPPPPPPPPPSVPSNNNLPKPAEP 395


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,092,348
Number of Sequences: 37544
Number of extensions: 174324
Number of successful extensions: 367
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)