Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_I17
(903 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.52
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.68
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 28 1.6
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 28 1.6
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.8
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 4.8
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom... 27 4.8
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 4.8
SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces... 26 8.4
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.52
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +1
Query: 835 PKXPPXXXXXXPXXPPPPPPXPP 903
P PP PPPPPP PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 834 PQXXPXXXXXSXPXPPPPPPP 896
P P + P PPPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +3
Query: 834 PQXXPXXXXXSXPXPPPPPPPXP 902
P P + PPPPPPP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.5 bits (63), Expect = 0.68
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 829 NCPKXPPXXXXXXPXXPPPPPP 894
N P PP P PPPPPP
Sbjct: 8 NPPPPPPPPGFEPPSQPPPPPP 29
Score = 27.5 bits (58), Expect = 2.8
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +1
Query: 835 PKXPPXXXXXXPXXPPPPPPXP 900
P PP P PPPPP P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 824 KTIAPKXPXXXXXIXPXPPPPPPP 895
KT AP P PPPPPPP
Sbjct: 291 KTQAPSSGDSANGGLPPPPPPPPP 314
Score = 26.2 bits (55), Expect = 6.4
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3
Query: 876 PPPPPPPXP 902
PPPPPPP P
Sbjct: 306 PPPPPPPPP 314
Score = 26.2 bits (55), Expect = 6.4
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 877 PPPPPPXPP 903
PPPPPP PP
Sbjct: 306 PPPPPPPPP 314
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 28.3 bits (60), Expect = 1.6
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1
Query: 868 PXXPPPPPPXPP 903
P PPPPPP PP
Sbjct: 942 PAFPPPPPPPPP 953
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 846 PXXXXXSXPXPPPPPPPXP 902
P S PPPPPPP P
Sbjct: 179 PATSLPSDYNPPPPPPPPP 197
Score = 26.2 bits (55), Expect = 6.4
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 877 PPPPPPXPP 903
PPPPPP PP
Sbjct: 189 PPPPPPPPP 197
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +1
Query: 835 PKXPPXXXXXXPXXPPPPPPXPP 903
P P P PPPPPP P
Sbjct: 225 PTYTPKQADPLPAPPPPPPPTLP 247
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 489 APQQHAELQRVHQVLHQEQSAQ 424
APQQH +LQR+ +L Q Q
Sbjct: 129 APQQHPQLQRMMPILSSNQPIQ 150
>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 464
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +3
Query: 435 VPGGGPGGLAEVRRAA 482
V GGG GGLA RRAA
Sbjct: 12 VIGGGSGGLASARRAA 27
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +1
Query: 835 PKXPPXXXXXXPXXPPPPPPXPP 903
P P P PPPPP PP
Sbjct: 1080 PSAPVANNVSKPSAVPPPPPPPP 1102
>SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 51
Score = 25.8 bits (54), Expect = 8.4
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = +2
Query: 56 PWHARGRRRDSLPK--QTCRPVDQWSR*STGGTRH 154
P H R + L K + RP+ QW R TG T H
Sbjct: 2 PSHKSFRTKQKLAKAARQNRPIPQWIRLRTGNTVH 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,121,105
Number of Sequences: 5004
Number of extensions: 26936
Number of successful extensions: 382
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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