Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_I16
         (864 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0238 - 27099454-27099651,27100970-27101053                       29   4.8  
03_06_0630 + 35189575-35190216,35190700-35190910,35191001-35191737     28   8.4  

>02_05_0238 - 27099454-27099651,27100970-27101053
          Length = 93

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
 Frame = +2

Query: 275 KSLXENAATVKFYRNMSMAATSFYGIITALFYYENISNWVLFFNVLVL-IIHIACYQLMM 451
           K+   N   +     + +AA   Y ++     + + + W  +  + V    +   Y+ + 
Sbjct: 8   KTRDANKKRMDLILRLILAANVIYIVVRMAVMHSSFT-WKHWIGLAVTSAAYFLPYKQLA 66

Query: 452 YISKPRYLNNTQLLDPGLDLNMXG 523
            +S+P Y  N +L++ G DLN  G
Sbjct: 67  NMSEPEYSENGELINAGYDLNAGG 90


>03_06_0630 + 35189575-35190216,35190700-35190910,35191001-35191737
          Length = 529

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 329 PSTYYDRILLWQHFLXRICLEPFVGGFPLGAGAIL 225
           PS+  +R+L+ +H     C EPF GG+  G G +L
Sbjct: 133 PSSGGERLLVHRHPDRYRCGEPFSGGYARGHGDLL 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,772,040
Number of Sequences: 37544
Number of extensions: 279511
Number of successful extensions: 448
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)