Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_I15
(898 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1250 - 25183375-25183815 114 1e-25
03_04_0027 + 16593133-16593573 110 2e-24
02_01_0563 + 4134954-4135388 108 7e-24
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 33 0.23
10_02_0023 + 4306350-4306908,4308429-4308814,4308917-4308991,430... 25 1.5
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 30 2.9
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 30 2.9
12_02_0299 - 17051570-17052474,17053542-17053755 29 3.8
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 29 3.8
01_01_0445 - 3319451-3320035 29 3.8
02_04_0567 - 23914330-23914461,23915016-23915136,23915954-239160... 29 6.6
01_05_0807 + 25409598-25410074 29 6.6
03_02_0784 - 11154395-11154888,11155284-11155360,11155447-111554... 28 8.8
01_05_0501 + 22764978-22765896,22766087-22766349,22766613-227668... 28 8.8
>07_03_1250 - 25183375-25183815
Length = 146
Score = 114 bits (274), Expect = 1e-25
Identities = 57/148 (38%), Positives = 79/148 (53%)
Frame = +1
Query: 88 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 267
M TS +K RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR
Sbjct: 1 MTTSLRKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 268 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 447
FH +NK + P +N+++LW++V + + A A GK P++++ + P++
Sbjct: 61 FHRLRNKFYSPAVNVERLWSMVPAEQAAEAAGA--GKAPLLDVTQFGYFKVLGKGLLPEK 118
Query: 448 PVIVXXXXXXXXXXXXIXDVGGACVLSA 531
P++V I GGA VL+A
Sbjct: 119 PIVVKAKLISKVAEKKIKAAGGAVVLTA 146
>03_04_0027 + 16593133-16593573
Length = 146
Score = 110 bits (264), Expect = 2e-24
Identities = 59/149 (39%), Positives = 76/149 (51%), Gaps = 1/149 (0%)
Frame = +1
Query: 88 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 267
M T KK RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR
Sbjct: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 268 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVK-AXXXXXXXXXXXPK 444
FH N+ CP +N+++LW++V K A A GK PVI++ + P+
Sbjct: 61 FHKLSNRFHCPAVNVERLWSMVPTD---KAAEAGAGKAPVIDVTQFGYTKVLGKGMLPPQ 117
Query: 445 QPVIVXXXXXXXXXXXXIXDVGGACVLSA 531
+P++V I GGA +L+A
Sbjct: 118 RPIVVKAKLISKVAEKKIKAAGGAVLLTA 146
>02_01_0563 + 4134954-4135388
Length = 144
Score = 108 bits (259), Expect = 7e-24
Identities = 58/149 (38%), Positives = 76/149 (51%), Gaps = 1/149 (0%)
Frame = +1
Query: 88 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 267
M T KK RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR
Sbjct: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 268 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVK-AXXXXXXXXXXXPK 444
FH N+ CP +N+++LW++V + A A GK PVI++ + P+
Sbjct: 61 FHRLSNRFHCPAVNVERLWSMVPAE-----AGAGAGKAPVIDVTQFGYTKVLGKGMLPPE 115
Query: 445 QPVIVXXXXXXXXXXXXIXDVGGACVLSA 531
+P++V I GGA +L+A
Sbjct: 116 RPIVVKAKLISKVAEKKIKAAGGAVLLTA 144
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 33.5 bits (73), Expect = 0.23
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +2
Query: 551 SXXXPXPPPXXPXXPXPXXPGPGXXP 628
S P PPP P P P PGPG P
Sbjct: 347 SGPPPPPPPAAPAAPRPPGPGPGPPP 372
>10_02_0023 +
4306350-4306908,4308429-4308814,4308917-4308991,
4309330-4309539,4309649-4309961,4310035-4310130,
4310220-4310357,4310436-4310536,4310645-4310712,
4310800-4310849,4311790-4311848,4312399-4312530
Length = 728
Score = 24.6 bits (51), Expect(2) = 1.5
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 549 YLXPXPPPPP 578
YL P PPPPP
Sbjct: 692 YLPPPPPPPP 701
Score = 24.6 bits (51), Expect(2) = 1.5
Identities = 9/24 (37%), Positives = 10/24 (41%)
Frame = +3
Query: 558 PXPPPPPXXXPXXXPXPXAXGIXP 629
P PPPPP P P + P
Sbjct: 694 PPPPPPPPSISYHPPPPASISYHP 717
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 563 PXPPPXXPXXPXPXXPGPGXXP 628
P PPP P P P P PG P
Sbjct: 626 PPPPPGKPGGPPPPPPRPGSLP 647
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 563 PXPPPXXPXXPXPXXPGPGXXP 628
P PPP P P P P PG P
Sbjct: 931 PPPPPGKPGGPPPPPPPPGSLP 952
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 559 PPXPPPXXXXPPXXXXPXPXXSPL 630
PP PPP PP P P +PL
Sbjct: 321 PPPPPPPPPPPPSFPWPFPPLAPL 344
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 558 PXPPPPPXXXPXXXPXPXAXGIXP 629
P PPPPP P P P G P
Sbjct: 363 PPPPPPPPPRPPPPPPPIKKGAPP 386
>01_01_0445 - 3319451-3320035
Length = 194
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3
Query: 549 YLXPXPPPPPXXXPXXXPXPXA 614
Y P PPPPP P P P A
Sbjct: 24 YTTPSPPPPPQHTPPPSPPPPA 45
>02_04_0567 -
23914330-23914461,23915016-23915136,23915954-23916048,
23916131-23916301,23917291-23917380,23917636-23918139
Length = 370
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 549 YLXPXPPPPPXXXPXXXPXP 608
+L P PPPPP P P P
Sbjct: 35 FLCPPPPPPPPPPPPPPPPP 54
>01_05_0807 + 25409598-25410074
Length = 158
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 348 AEVCICSRWQGPRHQYCQSW-ILQVARQRQTPQTTCHSKSKVLLKISREENQXCGWCL 518
AEV + SR +G C+SW I+ R+ Q H + + + REE + CG+ L
Sbjct: 4 AEVGVVSRDRG-----CESWSIVAEGESRKGEQGALHGEGEDRRRSRREEVRVCGFAL 56
>03_02_0784 -
11154395-11154888,11155284-11155360,11155447-11155497,
11155599-11155672,11156127-11156215,11156533-11156618,
11157570-11157669,11158540-11158622,11158776-11159194
Length = 490
Score = 28.3 bits (60), Expect = 8.8
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 549 YLXPXPPPPPXXXPXXXPXP 608
Y P PPPPP P P P
Sbjct: 426 YAPPPPPPPPPPPPQALPLP 445
>01_05_0501 +
22764978-22765896,22766087-22766349,22766613-22766836,
22767419-22767749,22767968-22768372
Length = 713
Score = 28.3 bits (60), Expect = 8.8
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +3
Query: 558 PXPPPPPXXXPXXXPXPXAXGI 623
P PPPPP P P P A +
Sbjct: 76 PPPPPPPPPPPPPVPVPPAYSV 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,259,043
Number of Sequences: 37544
Number of extensions: 404014
Number of successful extensions: 4393
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3325
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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