Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_I15
         (898 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...   134   8e-32
AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical ...    64   1e-10
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    31   1.5  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    31   1.5  
Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical pr...    29   6.0  
Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical pr...    29   6.0  
AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical...    29   6.0  
AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical...    29   6.0  
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z75550-7|CAA99925.2|  195|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score =  134 bits (324), Expect = 8e-32
 Identities = 67/148 (45%), Positives = 84/148 (56%)
 Frame = +1

Query: 88  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 267
           MA + +KTRKLRGHVS                 NAGG+HHHRIN DKYHPGYFGK+GMR 
Sbjct: 1   MAHALRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60

Query: 268 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 447
           FH  KN+++CP +N+++LW+LV ++ R K   A  GK PVI+  K            P+ 
Sbjct: 61  FHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLLPET 117

Query: 448 PVIVXXXXXXXXXXXXIXDVGGACVLSA 531
           P+IV            I   GGACVL A
Sbjct: 118 PLIVKARFFSHEAEQKIKKAGGACVLVA 145


>AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37E3.8b protein.
          Length = 88

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 34/91 (37%), Positives = 47/91 (51%)
 Frame = +1

Query: 259 MRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXX 438
           MR FH  KN+++CP +N+++LW+LV ++ R K   A  GK PVI+  K            
Sbjct: 1   MRVFHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLL 57

Query: 439 PKQPVIVXXXXXXXXXXXXIXDVGGACVLSA 531
           P+ P+IV            I   GGACVL A
Sbjct: 58  PETPLIVKARFFSHEAEQKIKKAGGACVLVA 88


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 558 PXPPPPPXXXPXXXPXPXAXGIXP 629
           P PPPPP   P   P P   G+ P
Sbjct: 262 PVPPPPPSVTPMPPPMPPTPGMTP 285


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 558 PXPPPPPXXXPXXXPXPXAXGIXP 629
           P PPPPP   P   P P   G+ P
Sbjct: 272 PVPPPPPSVTPMPPPMPPTPGMTP 295


>Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical
           protein Y37A1B.17b protein.
          Length = 1467

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 402 SWILQVARQRQTPQTTCHSKSKVLLKISREENQXC 506
           SW+ +++   Q P+T C      ++K+ REE   C
Sbjct: 5   SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38


>Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical
           protein Y37A1B.17a protein.
          Length = 1538

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 402 SWILQVARQRQTPQTTCHSKSKVLLKISREENQXC 506
           SW+ +++   Q P+T C      ++K+ REE   C
Sbjct: 5   SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38


>AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical
           protein Y37A1B.17b protein.
          Length = 1467

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 402 SWILQVARQRQTPQTTCHSKSKVLLKISREENQXC 506
           SW+ +++   Q P+T C      ++K+ REE   C
Sbjct: 5   SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38


>AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical
           protein Y37A1B.17a protein.
          Length = 1538

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 402 SWILQVARQRQTPQTTCHSKSKVLLKISREENQXC 506
           SW+ +++   Q P+T C      ++K+ REE   C
Sbjct: 5   SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 194 PALPRPPGCLRCFPIRPCP 138
           PA P+ P C  C P +PCP
Sbjct: 50  PACPQAPSCPVCPPPQPCP 68


>Z75550-7|CAA99925.2|  195|Caenorhabditis elegans Hypothetical
           protein T22C1.9 protein.
          Length = 195

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
 Frame = +1

Query: 91  ATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMD-----KYHPGYFGKL 255
           +T  KK+ K  GH                   N GG   H + M+     ++ P  F KL
Sbjct: 127 STKSKKSEKDVGHDDHKKEDVHGDQKDDNKDRNDGGRDSHVVQMEHNSEEEHEPSGFKKL 186

Query: 256 GMRNFHFRK 282
           G   F+F+K
Sbjct: 187 GKSFFNFKK 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,011,119
Number of Sequences: 27780
Number of extensions: 302494
Number of successful extensions: 1727
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)