Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_I14
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...   132   6e-32
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   2.6  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   4.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   6.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.2  

>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  132 bits (319), Expect = 6e-32
 Identities = 62/78 (79%), Positives = 69/78 (88%)
 Frame = +3

Query: 327 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERXRXDKDSKFRLILVESRIHRLARYYKTKS 506
           I+KA GLAP+LPEDLY LIKKAV++RKHLER R DKDSKFRLIL+ESRIHRLARYY+   
Sbjct: 74  ILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIESRIHRLARYYRKVG 133

Query: 507 VLPPNWKYESSTASALVA 560
            LPP WKYES+TASALVA
Sbjct: 134 ALPPTWKYESATASALVA 151



 Score = 90.2 bits (214), Expect = 3e-19
 Identities = 41/60 (68%), Positives = 47/60 (78%)
 Frame = +2

Query: 146 SALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 325
           SALPY RS P W K  AD V EQI K  KKG++PSQIGV LRDSHG+ QVRF+TG+KI+R
Sbjct: 14  SALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGIPQVRFITGQKIMR 73



 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 106 MGRMHAPGKGISQXGAALP 162
           MGRMH+ GKGI+   +ALP
Sbjct: 1   MGRMHSKGKGIA--SSALP 17


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.2 bits (50), Expect(2) = 2.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 513 PPNWKYESSTASALVA*VLXNNLTXXPXPPPPP 611
           PP+++  S+ A A     L ++    P PPPPP
Sbjct: 168 PPSFQPPSAAAPATS---LPSDYNPPPPPPPPP 197



 Score = 21.4 bits (43), Expect(2) = 2.6
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +3

Query: 591 PXPPPPPXXPXAP 629
           P PPPPP     P
Sbjct: 236 PAPPPPPPPTLPP 248


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/48 (29%), Positives = 18/48 (37%)
 Frame = +3

Query: 591  PXPPPPPXXPXAPVPXARISPFXEGXLGSXTXLXYLDEXGPPPPXXCP 734
            P PPPPP  P          P     + + T +  +    PPPP   P
Sbjct: 905  PTPPPPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPPPPPPP 952


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 591 PXPPPPPXXPXAPVPXARISPFXEG 665
           P PPPPP  P AP   A   P   G
Sbjct: 3   PAPPPPPPAP-APAAAAPAPPLMTG 26


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 17/56 (30%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
 Frame = +3

Query: 579 LTXXPXPPPP----PXXPXAPVPXARISPFXEGXLGSXTXLXYLDEXGPPPPXXCP 734
           L   P PPPP    P    AP+P    +P   G               PPPP   P
Sbjct: 728 LLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,845,855
Number of Sequences: 5004
Number of extensions: 52805
Number of successful extensions: 172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)