Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_I13
(857 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110490-2|CAB54440.1| 91|Caenorhabditis elegans Hypothetical ... 144 5e-35
Z66524-1|CAA91420.2| 500|Caenorhabditis elegans Hypothetical pr... 33 0.34
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 31 0.79
Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.1
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr... 30 1.8
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr... 30 1.8
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 29 4.2
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 5.6
U38378-1|AAA79751.1| 418|Caenorhabditis elegans Hypothetical pr... 29 5.6
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 29 5.6
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 29 5.6
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical pr... 28 7.4
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 28 7.4
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 28 7.4
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr... 28 7.4
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 28 7.4
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 28 7.4
U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protei... 28 9.8
M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein. 28 9.8
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 28 9.8
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 28 9.8
>AL110490-2|CAB54440.1| 91|Caenorhabditis elegans Hypothetical
protein Y48B6A.2 protein.
Length = 91
Score = 144 bits (350), Expect = 5e-35
Identities = 61/89 (68%), Positives = 75/89 (84%)
Frame = +3
Query: 96 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 275
MAKRTKKVGI GKYGTRYGASLRKM KK+EV QH++YTCSFCGK+AMKR GIW+C +C
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMAKKLEVAQHSRYTCSFCGKEAMKRKATGIWNCAKC 60
Query: 276 KRTVAGGAWVFSTTAASSCRSAVRRLREV 362
+ VAGGA+V+ T A++ RS +RRLR++
Sbjct: 61 HKVVAGGAYVYGTVTAATVRSTIRRLRDL 89
>Z66524-1|CAA91420.2| 500|Caenorhabditis elegans Hypothetical
protein T13H5.4 protein.
Length = 500
Score = 32.7 bits (71), Expect = 0.34
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 59 FSVNFCIGEVYQNGQTYQKGWNYWQIWHTLRCLST*NGQKDGSNPTRKVYLLILW 223
+S C + Y+ + +QK +N W+ H +RCL N +N T+ L LW
Sbjct: 405 YSCEICGNQTYKGPKAFQKHFNEWRHSHGMRCLGIPN-TSHFANITKIKDALDLW 458
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 31.5 bits (68), Expect = 0.79
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +2
Query: 677 PPGXARLPYWGAPSXSXPX*TPLPPGPXXLAXQ-PVSPXLQRPXXPGXPP 823
PP + PS S P P PPGP P P +RP P PP
Sbjct: 226 PPSPGPVDPSDEPSPSDPPGPPGPPGPPTRRPPGPPGPPTRRPPGPPGPP 275
>Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical
protein Y41E3.2 protein.
Length = 289
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/48 (35%), Positives = 18/48 (37%)
Frame = +2
Query: 677 PPGXARLPYWGAPSXSXPX*TPLPPGPXXLAXQPVSPXLQRPXXPGXP 820
P G P G P P P PPG +P SP P PG P
Sbjct: 163 PKGPDAAP--GEPGPKGPIGPPGPPGQAGAPGEPGSPAKSEPAVPGPP 208
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/51 (31%), Positives = 17/51 (33%)
Frame = +2
Query: 671 PNPPGXARLPYWGAPSXSXPX*TPLPPGPXXLAXQPVSPXLQRPXXPGXPP 823
P PP W P P TP PPG + P P G PP
Sbjct: 285 PRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPP 335
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/61 (29%), Positives = 20/61 (32%)
Frame = +2
Query: 665 IRPNPPGXARLPYWGAPSXSXPX*TPLPPGPXXLAXQPVSPXLQRPXXPGXPPXXXXXXP 844
+ P PP +P P P TP PP P P P PG P P
Sbjct: 263 VPPPPPSVTPMP---PPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 319
Query: 845 P 847
P
Sbjct: 320 P 320
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/60 (30%), Positives = 20/60 (33%)
Frame = +2
Query: 668 RPNPPGXARLPYWGAPSXSXPX*TPLPPGPXXLAXQPVSPXLQRPXXPGXPPXXXXXXPP 847
R PPG +P P P P PP P + P P P PP PP
Sbjct: 324 RFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPP 383
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/51 (31%), Positives = 17/51 (33%)
Frame = +2
Query: 671 PNPPGXARLPYWGAPSXSXPX*TPLPPGPXXLAXQPVSPXLQRPXXPGXPP 823
P PP W P P TP PPG + P P G PP
Sbjct: 295 PRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPP 345
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/61 (29%), Positives = 20/61 (32%)
Frame = +2
Query: 665 IRPNPPGXARLPYWGAPSXSXPX*TPLPPGPXXLAXQPVSPXLQRPXXPGXPPXXXXXXP 844
+ P PP +P P P TP PP P P P PG P P
Sbjct: 273 VPPPPPSVTPMP---PPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 329
Query: 845 P 847
P
Sbjct: 330 P 330
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/60 (30%), Positives = 20/60 (33%)
Frame = +2
Query: 668 RPNPPGXARLPYWGAPSXSXPX*TPLPPGPXXLAXQPVSPXLQRPXXPGXPPXXXXXXPP 847
R PPG +P P P P PP P + P P P PP PP
Sbjct: 334 RFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPP 393
>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical protein
R07G3.3a protein.
Length = 1982
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +2
Query: 677 PPGXARLPYWGAPSXSXPX*TPLPPGPXXLAXQPVSPXLQRPXXPGXPPXXXXXXPP 847
P A+ P +G + S P P P + Q VSP ++RP P P PP
Sbjct: 1480 PSFAAKRPSFGRQAQSSSNVIPPAPAPTPTSQQKVSP-VKRPIPPSIPNEPLDIIPP 1535
>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical protein
R07G3.3b protein.
Length = 1987
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +2
Query: 677 PPGXARLPYWGAPSXSXPX*TPLPPGPXXLAXQPVSPXLQRPXXPGXPPXXXXXXPP 847
P A+ P +G + S P P P + Q VSP ++RP P P PP
Sbjct: 1480 PSFAAKRPSFGRQAQSSSNVIPPAPAPTPTSQQKVSP-VKRPIPPSIPNEPLDIIPP 1535
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Frame = +2
Query: 671 PNPPGXARLP--YWGAPSXSXPX*TPLPPGPXXLAXQPVSPXLQRPXXPGXP 820
P PG +P P P P PPGP QP +P +P G P
Sbjct: 236 PGNPGAPGVPGQVIEVPGTPGPAGPPGPPGPIGPPGQPGAPGSSQPGPQGPP 287
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.7 bits (61), Expect = 5.6
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Frame = +2
Query: 671 PNPPGXARLPYWGAPSXSXPX*TPL-PPGPXXLAXQ-PVSPXLQRPXXPGXPPXXXXXXP 844
P PP R+P P P P+ PP P + P SP + P P PP P
Sbjct: 138 PPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNP--PRTPPSPIPPPP 195
Query: 845 P 847
P
Sbjct: 196 P 196
>U38378-1|AAA79751.1| 418|Caenorhabditis elegans Hypothetical
protein R11F4.3 protein.
Length = 418
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +2
Query: 671 PNPPGXARLPYWGAPSXSXPX*TPLPPGPXXLAXQPVSP-XLQRPXXP 811
P PP A +P + P T PP P A +P+ P ++RP P
Sbjct: 157 PQPPRFAEVPPIPDAPTNPPTTTTPPPPPPTRAPRPIIPTEVRRPQMP 204
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Frame = +2
Query: 671 PNPPGXARLPYW-GAPSXSXPX*TPLPPG-PXXLAXQPVSPXLQRPXXPGXPPXXXXXXP 844
P PPG A P G P P PG P +P++P +P G P P
Sbjct: 102 PGPPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPWKPCPQGPPGPPGPPGP 161
Query: 845 P 847
P
Sbjct: 162 P 162
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/52 (40%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +2
Query: 668 RPNPPGXARLPYWGAPSXSXPX*TPLPPGPXXLAXQP-VSPXLQRPXXPGXP 820
RP P G A P G P S TP P GP + QP S P PG P
Sbjct: 209 RPGPQGPAGAP--GQPGRSGGAGTPGPQGPPGPSGQPGHSGNDGVPGTPGNP 258
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/59 (28%), Positives = 21/59 (35%)
Frame = +2
Query: 671 PNPPGXARLPYWGAPSXSXPX*TPLPPGPXXLAXQPVSPXLQRPXXPGXPPXXXXXXPP 847
P PG P G+P P G A +P +P + P PG P PP
Sbjct: 173 PGRPGTDAAP--GSPGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPP 229
>Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical
protein ZC373.7 protein.
Length = 297
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +2
Query: 695 LPYWGAPSXSXPX*TPLPPGPXXLAXQPVSPXLQRP 802
LP W + P P PPGP A QP +P P
Sbjct: 90 LPAWCQCEPTKPTCPPGPPGPPGPAGQPGTPGAPGP 125
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/59 (28%), Positives = 21/59 (35%)
Frame = +2
Query: 671 PNPPGXARLPYWGAPSXSXPX*TPLPPGPXXLAXQPVSPXLQRPXXPGXPPXXXXXXPP 847
P PG P G+P P G A +P +P + P PG P PP
Sbjct: 168 PGRPGTDAAP--GSPGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPP 224
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 28.3 bits (60), Expect = 7.4
Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Frame = +2
Query: 671 PNPPGXARLPYW-GAPSXSXPX*TPLPPG-PXXLAXQPVSPXLQRPXXPGXPPXXXXXXP 844
P PPG A P G P P PG P +P++P +P G P P
Sbjct: 102 PGPPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCKPCPQGPPGPPGPPGP 161
Query: 845 P 847
P
Sbjct: 162 P 162
>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
protein C16A3.7 protein.
Length = 1119
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 192 QHAKYTCSFCGKDAMKRSCVGIWSCKRC 275
++ KY C+ C R G+WSCK C
Sbjct: 229 ENNKYECAICYTRITTRQ--GVWSCKTC 254
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/59 (28%), Positives = 21/59 (35%)
Frame = +2
Query: 671 PNPPGXARLPYWGAPSXSXPX*TPLPPGPXXLAXQPVSPXLQRPXXPGXPPXXXXXXPP 847
P PG P G+P P G A +P +P + P PG P PP
Sbjct: 168 PGRPGTDAAP--GSPGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPP 224
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 28.3 bits (60), Expect = 7.4
Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Frame = +2
Query: 671 PNPPGXARLPYW-GAPSXSXPX*TPLPPG-PXXLAXQPVSPXLQRPXXPGXPPXXXXXXP 844
P PPG A P G P P PG P +P++P +P G P P
Sbjct: 102 PGPPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCKPCPQGPPGPPGPPGP 161
Query: 845 P 847
P
Sbjct: 162 P 162
>U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protein
14 protein.
Length = 345
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = +2
Query: 707 GAPSXSXPX*TPLPPGPXXLAXQPVSPXLQRPXXPGXPP 823
G P P P PPGP + P + P G PP
Sbjct: 174 GTPGEIGPPGPPAPPGPDPHSLFPPQCPCEAPPGDGGPP 212
>M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein.
Length = 326
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = +2
Query: 707 GAPSXSXPX*TPLPPGPXXLAXQPVSPXLQRPXXPGXPP 823
G P P P PPGP + P + P G PP
Sbjct: 155 GTPGEIGPPGPPAPPGPDPHSLFPPQCPCEAPPGDGGPP 193
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = +2
Query: 677 PPGXARLPYWGAPSXSXPX*TPLPPGPXXLAXQPVSPXLQRPXXPGXPP 823
PPG A P G P P PPGP +P + P PG P
Sbjct: 144 PPGPAGPP--GPDGNKGPLGPPGPPGPEGPNGEPGNKGPAGPPGPGGKP 190
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Frame = +2
Query: 668 RPNPPGXARLP----YWGAPSXSXPX*TPLPPGPXXLAXQPVSPXLQ-RPXXPG 814
RP PPG A P GAP P PPGP P P +P PG
Sbjct: 254 RPGPPGPAGPPGPPGNNGAPGGGYGVGPPGPPGPSGRPGAPGQPGPDGQPGAPG 307
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,255,616
Number of Sequences: 27780
Number of extensions: 314804
Number of successful extensions: 1007
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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