Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_I12
         (848 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC014339-1|AAH14339.1|  201|Homo sapiens transmembrane 4 L six f...    33   1.3  
AF253321-1|AAF64523.1|  716|Homo sapiens cervical mucin MUC5B pr...    33   1.3  
BC012191-1|AAH12191.1|  377|Homo sapiens hypothetical protein MG...    33   1.7  
AY327116-1|AAQ72571.1| 3277|Homo sapiens laminin alpha 3 splice ...    31   7.0  
AY327115-1|AAQ72570.1| 3333|Homo sapiens laminin alpha 3 splice ...    31   7.0  
AB107369-1|BAD13428.1| 3333|Homo sapiens laminin alpha 3b chain ...    31   7.0  

>BC014339-1|AAH14339.1|  201|Homo sapiens transmembrane 4 L six
           family member 18 protein.
          Length = 201

 Score = 33.1 bits (72), Expect = 1.3
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 736 IHTNILLYIVNCQTFVXVKLRIDQYXWFF-GIIYLSSVVVLAKSVIIIKNYN 584
           I  NILLY  N QT      ++  Y W+F GI +   ++++  +V+++   N
Sbjct: 22  IIVNILLYFPNGQTSYASSNKLTNYVWYFEGICFSGIMMLIVTTVLLVLENN 73


>AF253321-1|AAF64523.1|  716|Homo sapiens cervical mucin MUC5B
           protein.
          Length = 716

 Score = 33.1 bits (72), Expect = 1.3
 Identities = 25/76 (32%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
 Frame = +1

Query: 97  CALIAVALAAPNTIGDVPTALPSHPRGCVWILGKCSRNC--EEGTHSYTTGCRP------ 252
           C L  +  AA  T    PTA+PS   G  WIL + +      E T S  T   P      
Sbjct: 481 CILTELTTAATTTAATGPTAMPSSTPGTTWILTELTTTATTTESTGSTATPSSPGTTWIL 540

Query: 253 KMPEATCDVPVPVQET 300
             P  T  V VP   T
Sbjct: 541 TEPSTTATVTVPTGST 556


>BC012191-1|AAH12191.1|  377|Homo sapiens hypothetical protein
           MGC4655 protein.
          Length = 377

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 135 HRRCPDSPALASSWLRVDPRKMLKELRRRHPQLHD 239
           HR  P  PA +S   RV PR+  K   RR P+L D
Sbjct: 21  HRGPPPDPARSSYPTRVQPRRPTKGTHRRRPRLRD 55


>AY327116-1|AAQ72571.1| 3277|Homo sapiens laminin alpha 3 splice
           variant b2 protein.
          Length = 3277

 Score = 30.7 bits (66), Expect = 7.0
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = +1

Query: 244 CRPKMPEATCDVPVPVQETHPICDFSACYCDPGTVRGHENEEMRQTRRLLEVMEPSCSR 420
           CRP +    CD  +      P C  S+  CDP    G  N  +   +  L V  P+CSR
Sbjct: 557 CRPGVTGQRCDRCLSGAYDFPHCQGSSSACDPA---GTINSNLGYCQCKLHVEGPTCSR 612


>AY327115-1|AAQ72570.1| 3333|Homo sapiens laminin alpha 3 splice
           variant b1 protein.
          Length = 3333

 Score = 30.7 bits (66), Expect = 7.0
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = +1

Query: 244 CRPKMPEATCDVPVPVQETHPICDFSACYCDPGTVRGHENEEMRQTRRLLEVMEPSCSR 420
           CRP +    CD  +      P C  S+  CDP    G  N  +   +  L V  P+CSR
Sbjct: 557 CRPGVTGQRCDRCLSGAYDFPHCQGSSSACDPA---GTINSNLGYCQCKLHVEGPTCSR 612


>AB107369-1|BAD13428.1| 3333|Homo sapiens laminin alpha 3b chain
           protein.
          Length = 3333

 Score = 30.7 bits (66), Expect = 7.0
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = +1

Query: 244 CRPKMPEATCDVPVPVQETHPICDFSACYCDPGTVRGHENEEMRQTRRLLEVMEPSCSR 420
           CRP +    CD  +      P C  S+  CDP    G  N  +   +  L V  P+CSR
Sbjct: 557 CRPGVTGQRCDRCLSGAYDFPHCQGSSSACDPA---GTINSNLGYCQCKLHVEGPTCSR 612


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,135,721
Number of Sequences: 237096
Number of extensions: 2158029
Number of successful extensions: 9149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9136
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10761200974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)