Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_I12
         (848 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50311-8|AAA92312.1|  145|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U55364-11|AAA97976.1|  196|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z81102-1|CAB03202.1|  320|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U64601-8|AAB04576.2|  413|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z29967-2|CAA82855.1|  722|Caenorhabditis elegans lin-15A protein.      28   7.3  
U29377-10|AAA68717.1|  140|Caenorhabditis elegans Hypothetical p...    28   7.3  
AL110482-7|CAB54388.1|  106|Caenorhabditis elegans Hypothetical ...    28   9.6  

>U50311-8|AAA92312.1|  145|Caenorhabditis elegans Hypothetical
           protein C25E10.7 protein.
          Length = 145

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 262 EATCDVPVPVQETHPICDFSACYCDPGTVR 351
           + TCD P P    H  C  + C C PG VR
Sbjct: 92  QPTCDDPYPTSCEHDRCIRNVCRCLPGLVR 121


>Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical
           protein T23F1.6 protein.
          Length = 330

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +1

Query: 76  MRCLIMLCALIAVALAAPNTIGDVPTALPSHPRGCVW-ILGKCSRNCEEGTHSYTTGCRP 252
           MRC+I+L A +A+A+A  ++I +   A      GC   +   CS  C++ +  Y+  C+P
Sbjct: 1   MRCVIILFA-VALAVAQASSIRETRQA----SCGCAQSVQPTCS--CQQASQQYSCSCQP 53

Query: 253 KMP 261
             P
Sbjct: 54  STP 56


>U55364-11|AAA97976.1|  196|Caenorhabditis elegans Hypothetical
           protein F21C10.4 protein.
          Length = 196

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 590 ILYYNHRFRQNYYTRQINNPEKPTILIYSQFDXNKSL 700
           I+Y NH +  + Y R  ++PEKPTI  YS  D +  L
Sbjct: 105 IIYDNHHYYWHGYYR--SHPEKPTICEYSISDEDGEL 139


>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
           protein T01D3.3b protein.
          Length = 1011

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 23/82 (28%), Positives = 35/82 (42%)
 Frame = +1

Query: 160 PSHPRGCVWILGKCSRNCEEGTHSYTTGCRPKMPEATCDVPVPVQETHPICDFSACYCDP 339
           P+ P     +  +C R CE+ T  + T C    P   CD   P +   P C  + C+C  
Sbjct: 609 PNDPTSRCVLPAECDRGCEDPTKEFMT-CGSSCPMG-CDNRHP-KNCAP-CQ-TGCFCKN 663

Query: 340 GTVRGHENEEMRQTRRLLEVME 405
           G V   EN     T + +++ E
Sbjct: 664 GLV--FENSATWHTSKCIKIEE 683


>Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical
           protein T01D3.3a protein.
          Length = 802

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 23/82 (28%), Positives = 35/82 (42%)
 Frame = +1

Query: 160 PSHPRGCVWILGKCSRNCEEGTHSYTTGCRPKMPEATCDVPVPVQETHPICDFSACYCDP 339
           P+ P     +  +C R CE+ T  + T C    P   CD   P +   P C  + C+C  
Sbjct: 400 PNDPTSRCVLPAECDRGCEDPTKEFMT-CGSSCPMG-CDNRHP-KNCAP-CQ-TGCFCKN 454

Query: 340 GTVRGHENEEMRQTRRLLEVME 405
           G V   EN     T + +++ E
Sbjct: 455 GLV--FENSATWHTSKCIKIEE 474


>Z81102-1|CAB03202.1|  320|Caenorhabditis elegans Hypothetical
           protein M02B1.3 protein.
          Length = 320

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -2

Query: 643 IYLSSVVVLAKSVIIIKNYNMTIEPKIMFKHKISI-NYSRISTTA 512
           IY+ S  VL+K  ++   + M +E   +F H  SI + S++STT+
Sbjct: 168 IYVLSTAVLSKKFLLYAYWAMLMEVSSIFLHTRSILHISKLSTTS 212


>U64601-8|AAB04576.2|  413|Caenorhabditis elegans Hypothetical
           protein M03F4.6 protein.
          Length = 413

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/57 (29%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
 Frame = +1

Query: 193 GKCSRNCEEGTHSYTTGC-RPKMPEATCDVPVPVQETHPICDFSACYCDPGTVRGHE 360
           GKC   C  G   Y   C R    +  C+      +    C    C C PGT R  E
Sbjct: 107 GKCVVLCPVGQQLYGVECTRVAHYQQPCEKDSQCVDPFNACIAGTCLCAPGTTRDTE 163


>Z29967-2|CAA82855.1|  722|Caenorhabditis elegans lin-15A protein.
          Length = 722

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 189 PRKMLKELRRRHPQLHDRLPP 251
           PR+M+K +R R+P L ++ PP
Sbjct: 669 PRRMIKVVRNRNPHLANKWPP 689


>U29377-10|AAA68717.1|  140|Caenorhabditis elegans Hypothetical
           protein K05F1.10 protein.
          Length = 140

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 12/104 (11%)
 Frame = +1

Query: 85  LIMLCALIAVALAAP-NTIGDVPTALPSH----PRGCVWILGKCSRNCEE-GTHSYTTGC 246
           L++LCALIAVA A+  +   +    LP H    P     I  +  R  EE   H +   C
Sbjct: 3   LLLLCALIAVASASLFHHHHNKRRILPRHRVRSPATRTRIHVRSERKAEECQKHEHHLIC 62

Query: 247 RPKMP-EATCD----VPVPVQETHPI-CDFSACYCDPGTVRGHE 360
            P+   + TC+     P  +   H   C F  C C+ G VR  +
Sbjct: 63  GPERHCDRTCENLFSPPHCLNHLHHAKCYFPRCVCNDGYVRSEK 106


>AL110482-7|CAB54388.1|  106|Caenorhabditis elegans Hypothetical
           protein Y39G8B.9 protein.
          Length = 106

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 76  MRCLIMLCALIAVALAAPNTI 138
           M+ LI+LC +IAVALA P  +
Sbjct: 1   MKYLIVLCLVIAVALAKPQNL 21


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,120,104
Number of Sequences: 27780
Number of extensions: 351284
Number of successful extensions: 1067
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)