Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_I08
         (896 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.23 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 13/44 (29%), Positives = 14/44 (31%)
 Frame = +1

Query: 709 PXRGXXGPPPXXXPAPXTTXPXXXTXPXXPPXXXPPPXPPPXXN 840
           P  G  GP P    +P          P   P    PP  PP  N
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQN 59



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
 Frame = +1

Query: 661 PXPXXXXASXPPXXKXPXRGXXGPPPXXXP-APXTTXP 771
           P P    +   P    P     GPPP   P AP +  P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 825 PPXXKXPPPPPXXXLPXS 878
           PP    PPPPP    P S
Sbjct: 338 PPKPAPPPPPPSSSGPDS 355



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 796 PPXXXPPPXPPPXXNXP 846
           PP   PPP PPP  + P
Sbjct: 338 PPKPAPPP-PPPSSSGP 353


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 620  PPPPPPXXXXG 652
            PPPPPP    G
Sbjct: 1355 PPPPPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,457
Number of Sequences: 438
Number of extensions: 7465
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)