Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_I07
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.69 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.8  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.69
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 837 PPXPXPPPPXP 869
           PP P PPPP P
Sbjct: 338 PPKPAPPPPPP 348



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 822 PPPPXPPXPXPPPPXP 869
           PP P PP P P    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 828 PPXPPXPXPPPPXPPP 875
           PP P  P PPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 744 PPPPXXXPPPP 776
           PP P   PPPP
Sbjct: 338 PPKPAPPPPPP 348


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/41 (29%), Positives = 12/41 (29%)
 Frame = +3

Query: 750 PPXXXPPPPXXXXXXPXXXXXXXXPPPPXPPXPXPPPPXPP 872
           P    P P       P        P P   P P  PP  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/41 (26%), Positives = 11/41 (26%)
 Frame = +2

Query: 647 PXXXPPXPPPPXXXXXXXPXXXPPPXPXXXXPXPPPXXXXP 769
           P    P P P        P    PP P    P   P    P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 852  PPPPXPPP 875
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,604
Number of Sequences: 438
Number of extensions: 13508
Number of successful extensions: 41
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)