Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_I03
(860 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69383-1|CAA93412.1| 409|Caenorhabditis elegans Hypothetical pr... 30 2.4
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 29 3.2
Z81118-3|CAB03325.1| 346|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z75534-1|CAH04713.2| 326|Caenorhabditis elegans Hypothetical pr... 29 5.6
AL110484-10|CAB54401.1| 237|Caenorhabditis elegans Hypothetical... 28 7.4
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 28 9.8
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 9.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 9.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 9.8
>Z69383-1|CAA93412.1| 409|Caenorhabditis elegans Hypothetical
protein F13E9.4 protein.
Length = 409
Score = 29.9 bits (64), Expect = 2.4
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Frame = +2
Query: 263 GQNDDGLFG--KAGYNREIFNDDRGQLTGQAYGTRVLGPGGDSTNYGGRLDWANKNAQAA 436
GQN + G + GY D G Q G V G GG S +YG + + Q
Sbjct: 69 GQNQGSMQGYSQQGYGGNS-QQDYGYSQSQGSGMGVQGYGGSSQSYGQQAFAQQQRPQQG 127
Query: 437 IDINRQIGGRSGMTASGS 490
N G SG ASGS
Sbjct: 128 FQSN----GFSGQQASGS 141
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 29.5 bits (63), Expect = 3.2
Identities = 26/86 (30%), Positives = 30/86 (34%)
Frame = +2
Query: 236 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGDSTNYGGRLDWA 415
GGG G G DG +G G+ G + G YG +G GG YGG D
Sbjct: 167 GGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGG----YGGGGD-G 221
Query: 416 NKNAQAAIDINRQIGGRSGMTASGSG 493
GG GM G G
Sbjct: 222 GYGPSGGYGGGYGPGGGYGMGGGGGG 247
>Z81118-3|CAB03325.1| 346|Caenorhabditis elegans Hypothetical
protein T10G3.2 protein.
Length = 346
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -1
Query: 323 HH*KSLCCNRLYRRVHRRSVPKCRRPSLLPFSCPT 219
H +CCN L RR RRS P P P S T
Sbjct: 281 HRFSQMCCNSLRRRPVRRSHPISPSPGTSPSSVVT 315
>Z75534-1|CAH04713.2| 326|Caenorhabditis elegans Hypothetical
protein F08A10.2 protein.
Length = 326
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = -2
Query: 226 VPRDVTGVSL*K*ASDGVFFFVIRRPVYFCVYTHQDCSDEKQQF---GIHFELFVVW 65
+P V G+SL ++ +F I P+Y VY + D +D+ F HF + W
Sbjct: 10 IPNTVAGISLFIFSAIYLFSLFIMFPIYVYVYRYNDKNDKMALFHPITSHFYKMIKW 66
>AL110484-10|CAB54401.1| 237|Caenorhabditis elegans Hypothetical
protein Y38E10A.10 protein.
Length = 237
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 179 IRGLF-SKRHPRDVTWDTKMGGGKVFGTLGQNDD 277
+ GL+ + R +D+ +T G KVF G+NDD
Sbjct: 155 VNGLWCASRFIKDINEETHYEGSKVFSIYGRNDD 188
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 27.9 bits (59), Expect = 9.8
Identities = 22/84 (26%), Positives = 29/84 (34%), Gaps = 2/84 (2%)
Frame = +3
Query: 204 TPVTSRGTRKWEEGRSSALWDRTTMDSSVKPVTTERFSMMTAVN*PARLTAP--GS*DPE 377
TP T+ T ++ TT +++ P TT T T P + P
Sbjct: 124 TPTTTTTTPTTTTTETTTTPTTTTTETTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPT 183
Query: 378 VTALTTVDVWTGPTRTHKPPLT*T 449
T T T PT T P T T
Sbjct: 184 TTTTTPTTTTTAPTTTTTTPTTTT 207
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 344 QAYGTRVLGP-GGDSTNYGGRLDWANKNAQAAIDINRQIGGRSGMTASGSG 493
Q +G G GG+ N GG +N Q + N GG G+TASG G
Sbjct: 160 QGFGNNQQGGFGGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 209
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 344 QAYGTRVLGP-GGDSTNYGGRLDWANKNAQAAIDINRQIGGRSGMTASGSG 493
Q +G G GG+ N GG +N Q + N GG G+TASG G
Sbjct: 181 QGFGNNQQGGFGGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 230
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 344 QAYGTRVLGP-GGDSTNYGGRLDWANKNAQAAIDINRQIGGRSGMTASGSG 493
Q +G G GG+ N GG +N Q + N GG G+TASG G
Sbjct: 166 QGFGNNQQGGFGGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 215
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,964,867
Number of Sequences: 27780
Number of extensions: 461826
Number of successful extensions: 1172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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