Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_I02
(852 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 33 0.068
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 30 0.36
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 28 1.5
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.9
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 2.6
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 27 3.4
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha... 27 3.4
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 27 3.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 4.5
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 26 5.9
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 26 7.8
>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 32.7 bits (71), Expect = 0.068
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +3
Query: 387 VTTLTPVPSKPVHPTLPPNQIKPV--PVYPTPATR 485
V LTPVP KP P+ P ++ PV P+ PTP +R
Sbjct: 149 VAALTPVPKKPSKPSKPRKKV-PVSHPLPPTPPSR 182
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 30.3 bits (65), Expect = 0.36
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = +3
Query: 411 SKPVHPTLPPNQIKPVPVYPTPATRPITTPGPGSVXQLVTFYNXQGXXSVIXPYSYSDAX 590
SK PT PP P PTP++ I TP PG++ F Q + + P S D
Sbjct: 153 SKTSEPT-PPFSYVQTPCIPTPSSALIDTPFPGALDSEFGFDESQ---APLFPASDGDCQ 208
Query: 591 KA 596
+A
Sbjct: 209 RA 210
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 420 VHPTLPPNQIKPVPVYPTPATRPITTPGPGS 512
++P P ++KP PTPA T+P P S
Sbjct: 314 INPKRRPIEVKPAAPVPTPAPPVKTSPHPAS 344
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 402 PVPSKPVHPTLPPNQIKPVPVYPTPATRPI 491
PVP +P+ P PP +PVP P P P+
Sbjct: 113 PVPEEPL-PGEPPLPDEPVPEEPLPGEPPL 141
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 407 TFEAGSSNSTTQPD*ACPCVPYSSDAAHHHSRT 505
TFE ++N D + C Y++ A+HH S +
Sbjct: 4576 TFEQSNTNVLALADASMKCFNYANTASHHRSNS 4608
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 393 TLTPVPSKPVHPTLPP-NQIKPVPVYPTPATRPITTPGPGSVXQLVT 530
+LTP+ S+P H +LPP ++ P RP SV +++
Sbjct: 360 SLTPLSSRPAHTSLPPIPTVQTTSSNVPPVNRPSLKSKSPSVSNILS 406
>SPBC14F5.12c |cbh2||centromere binding protein
Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -2
Query: 413 RRYRR*SCH-DRFDLSWRYGCRSRLDNRRLCEWL 315
R +R+ + H D D WRY +R+ + EWL
Sbjct: 236 RAFRQANAHPDSMDFHWRYNGTARMTTSIMEEWL 269
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 27.1 bits (57), Expect = 3.4
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 402 PVPS-KPVHPTLPPNQIKPVPVYPTPATRPITTPGP 506
PVPS P+ T P +PVYP+P R + T P
Sbjct: 58 PVPSTNPILTTEPIVGPAALPVYPSPLYRDLQTNTP 93
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 402 PVPSKPVHPTLPPNQIKPVPVYPTPATRPITTPGPG 509
PVP P +P + PV P P+ TP G
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAG 1225
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +2
Query: 455 CPCV--PYSSDAAHHHSRTWKRAXARHFLQXPGXXKC 559
CPC+ P+ +DAA H + A R L P KC
Sbjct: 383 CPCILIPHINDAASDHPAWPQDAFNRVALGLPSNFKC 419
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 234 KPIDKNANIDFINMEAGGARP 296
K + KN+ I F++ E GG +P
Sbjct: 182 KSVKKNSEIKFVSEERGGTKP 202
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,707
Number of Sequences: 5004
Number of extensions: 45781
Number of successful extensions: 168
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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