Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_H24
(925 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces... 272 5e-74
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 37 0.005
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.008
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.020
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 34 0.025
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 34 0.025
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.033
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 34 0.033
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 33 0.043
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.23
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 29 0.93
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c... 28 2.1
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 27 2.8
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 27 2.8
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 27 2.8
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 27 2.8
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 4.9
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 4.9
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 6.5
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 6.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 8.6
>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 272 bits (667), Expect = 5e-74
Identities = 135/192 (70%), Positives = 153/192 (79%)
Frame = +3
Query: 75 AVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 254
A ISKKRKFV DGVF AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ VLG
Sbjct: 3 AAFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLG 62
Query: 255 EKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 434
EKGRRIRELT++VQKRF E +VELYAEKV RGLCA+AQ ESLRYKL+ GLAVRRA Y
Sbjct: 63 EKGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAY 122
Query: 435 GVLRFIMESGARGCEVVVSGQLRGQRAXSMKFVHGLMIHSGDPCNDYVNTATXHVLLQTX 614
GVLR++ME+GA+GCEVV+SG+LR RA SMKF G MIHSG P D++++AT HVLL+
Sbjct: 123 GVLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLR-Q 181
Query: 615 DYXRXXVKIMXP 650
VKIM P
Sbjct: 182 GVLGVKVKIMLP 193
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 36.7 bits (81), Expect = 0.005
Identities = 23/60 (38%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Frame = +2
Query: 719 PXXXPPX-PXSR-PPQXXLPXPPXAXCXXPXPPPSXXPX*RXXLHXPPXPPPPPXXPXLP 892
P PP P S PPQ P PP P PPPS P PP P P P +P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVP-PPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Score = 33.9 bits (74), Expect = 0.033
Identities = 23/62 (37%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Frame = +2
Query: 731 PPXPXSRPP-QXXLPXPPXAXCXXPXPPPSXXPX*RXXLHXPPXPP--PPPXXPXLPXSS 901
P P S PP + PP P PPP P P PP PP P LP SS
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP---PPLPASS 1739
Query: 902 SP 907
+P
Sbjct: 1740 AP 1741
Score = 31.1 bits (67), Expect = 0.23
Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = +3
Query: 849 PPPXP---PPPPXXPXSPXPPXPSXPP 920
PPP P PPPP P P P PS PP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGP-PSAPP 1732
Score = 30.3 bits (65), Expect = 0.40
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 849 PPPXPPPPPXXPXSPXPPXPSXPP 920
P P PPP P PP P+ PP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPP 1728
Score = 29.1 bits (62), Expect = 0.93
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 849 PPPXPPPPPXXPXSPXPPXPS 911
PP PP P P +P PP P+
Sbjct: 1717 PPSAPPMPAGPPSAPPPPLPA 1737
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 849 PPPXPPPPPXXPXSPXPPXPSXPP 920
PP P P P PP PS PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPP 1722
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Frame = +3
Query: 849 PPPX--PPPPPXXPXSPXPPXPSXPP 920
PPP PPPP P PP PP
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 26.2 bits (55), Expect = 6.5
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = +2
Query: 740 PXSRPPQXXLPXPPXAXCXXPXPPPSXXPX*RXXLHXPPXPPP 868
P PP +P PP A P PPS P P P P
Sbjct: 1705 PTPPPPPMSVPPPPSAP-PMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.9 bits (79), Expect = 0.008
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = +2
Query: 704 LXXRTPXXXPPXPX-SRPPQXXLPXPPXAXCXXPXPPPSXXPX*RXXLHXPPXPPPPP 874
L ++P PP P +P PP A PPP P PP PPPPP
Sbjct: 727 LLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG-VAGAGPPPPPPPPP 783
Score = 33.9 bits (74), Expect = 0.033
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 852 PPXPPPPPXXPXSPXPPXPSXPP 920
PP PPPPP + PP P PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
Score = 33.1 bits (72), Expect = 0.057
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +3
Query: 849 PPPXPPPPPXXPXSPXPPXPSXP 917
PPP PPPP P PP P P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Frame = +3
Query: 849 PPPXPPPPPXXPXSP---XPPXPSXPP 920
P P P P P P +P PP P PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +3
Query: 852 PPXPPPPPXXPXSPXPPXPSXPP 920
PP PPP P P P PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPP 754
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.5 bits (63), Expect(2) = 0.020
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +2
Query: 800 PXPPPSXXPX*RXXLHXPPXPPPPPXXPXLPXSSSPL 910
P PP+ P L PP PPPPP P ++S L
Sbjct: 221 PEIPPTYTPKQADPLPAPP-PPPPPTLPPQSTNTSQL 256
Score = 26.2 bits (55), Expect = 6.5
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3
Query: 849 PPPXPPPPP 875
PPP PPPPP
Sbjct: 189 PPPPPPPPP 197
Score = 23.8 bits (49), Expect(2) = 0.020
Identities = 10/31 (32%), Positives = 11/31 (35%)
Frame = +2
Query: 734 PXPXSRPPQXXLPXPPXAXCXXPXPPPSXXP 826
P P +PP P P PPP P
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197
Score = 23.8 bits (49), Expect(2) = 4.5
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2
Query: 845 HXPPXPPPPP 874
+ PP PPPPP
Sbjct: 187 YNPPPPPPPP 196
Score = 21.0 bits (42), Expect(2) = 4.5
Identities = 7/19 (36%), Positives = 9/19 (47%)
Frame = +2
Query: 851 PPXPPPPPXXPXLPXSSSP 907
PP PPPP ++ P
Sbjct: 191 PPPPPPPAVEDQAADANEP 209
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 34.3 bits (75), Expect = 0.025
Identities = 23/72 (31%), Positives = 23/72 (31%), Gaps = 2/72 (2%)
Frame = +2
Query: 698 HILXXRTPXXXPPXPXSRPPQXXLPXPPXAXCXXPXPPPSXXPX*RXXLHXPPXPP--PP 871
HI P P PQ L P A PPPS PP P PP
Sbjct: 114 HIGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPP 173
Query: 872 PXXPXLPXSSSP 907
P P P S P
Sbjct: 174 PAQPAAPVKSPP 185
Score = 33.1 bits (72), Expect = 0.057
Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Frame = +2
Query: 716 TPXXXPPXPXSRPPQXXLPXPPXAXCXXPXPPPSXXPX*RXXLHXPPXPPPPP--XXPXL 889
+P PP P PP PP PPS PP PPPP P
Sbjct: 153 SPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVA 212
Query: 890 PXSSSP 907
SS P
Sbjct: 213 NTSSRP 218
Score = 31.1 bits (67), Expect = 0.23
Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Frame = +2
Query: 719 PXXXPPXPXSRPPQXXLPXPPXAXCXXPXPP--PSXXPX*RXXLHXPPXPPPPPXXPXLP 892
P PP P S PP P + P P P P L PP PP P P
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSL-PSAVPPMPPKVPPPP 205
Query: 893 XSSSPL 910
S +P+
Sbjct: 206 LSQAPV 211
Score = 26.6 bits (56), Expect = 4.9
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 849 PPPXPPPPPXXPXSPXPP 902
PPP PP P +P PP
Sbjct: 5 PPPPPPAPAPAAAAPAPP 22
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 849 PPPXPPPPPXXPXSPXPPXPSXPP 920
P P P P + PP PS PP
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPP 151
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +3
Query: 852 PPXPPPPPXXPXSPXPPXPSXPP 920
PP P PP P S PP PS P
Sbjct: 144 PPRPSIPPPSPAS-APPIPSKAP 165
Score = 25.8 bits (54), Expect = 8.6
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 849 PPPXPPPPPXXPXSPXPPXP 908
P P PPPP P + P P
Sbjct: 3 PAPPPPPPAPAPAAAAPAPP 22
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +3
Query: 849 PPPXPPPPPXXPXSPXPPXPSXPP 920
PPP P P P S PP PS P
Sbjct: 150 PPPSPASAPPIP-SKAPPIPSSLP 172
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 34.3 bits (75), Expect = 0.025
Identities = 20/42 (47%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = -1
Query: 919 GGXEGXGGXGEXGXXGGGGGXG---GGMXXGALXGXXGRGGA 803
GG G G G G GGG G GG GA G GRGGA
Sbjct: 12 GGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGA 53
Score = 30.7 bits (66), Expect = 0.30
Identities = 17/39 (43%), Positives = 18/39 (46%)
Frame = -1
Query: 919 GGXEGXGGXGEXGXXGGGGGXGGGMXXGALXGXXGRGGA 803
GG G GG G G GGG G G G GRGG+
Sbjct: 23 GGRGGFGG-GRGGARGGGRGGARGGRGGRGGARGGRGGS 60
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = -2
Query: 882 GXXGGGGGXGGXXRXXRXXGXXDGGGXGXXQXAXGGXGRXXWGGRLXGXGG 730
G GG GG G GGG G + G R GGR GG
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGG 56
Score = 28.3 bits (60), Expect = 1.6
Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = -2
Query: 909 RGEEEXGXXGXXGG-GGGXGGXXRXXRXXGXXDGGGXGXXQXAXGGXGRXXWGGRL 745
RG G G GG GG GG R GG G + GG G G ++
Sbjct: 18 RGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGGAKV 73
Score = 25.8 bits (54), Expect = 8.6
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -1
Query: 892 GEXGXXGGGGGXGGGMXXGALXGXXGRGGA 803
G G GG G GG G GRGGA
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFGGGRGGA 35
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.9 bits (74), Expect = 0.033
Identities = 20/63 (31%), Positives = 23/63 (36%)
Frame = +2
Query: 713 RTPXXXPPXPXSRPPQXXLPXPPXAXCXXPXPPPSXXPX*RXXLHXPPXPPPPPXXPXLP 892
RT P P S PP PP A P P+ P PP P P P LP
Sbjct: 411 RTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470
Query: 893 XSS 901
++
Sbjct: 471 PAA 473
Score = 32.3 bits (70), Expect = 0.099
Identities = 22/69 (31%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Frame = +2
Query: 731 PPXPXSRPPQXXLPXPPXAXCXXPXPPPSXXPX*RXXLHXPP--------XPPPPPXXPX 886
PP P +P PP P PPP P PP PP PP P
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP--STGRQPPPLSSSRAVSNPPAPP--PA 394
Query: 887 LPXSSSPLL 913
+P S+P L
Sbjct: 395 IPGRSAPAL 403
Score = 30.7 bits (66), Expect = 0.30
Identities = 20/55 (36%), Positives = 23/55 (41%)
Frame = +2
Query: 719 PXXXPPXPXSRPPQXXLPXPPXAXCXXPXPPPSXXPX*RXXLHXPPXPPPPPXXP 883
P P P SRPP+ +P A P PPPS + PP PP P P
Sbjct: 230 PPIPPSIPSSRPPER-VPSLS-APAPPPIPPPS-----NGTVSSPPNSPPRPIAP 277
Score = 30.7 bits (66), Expect = 0.30
Identities = 21/71 (29%), Positives = 24/71 (33%), Gaps = 8/71 (11%)
Frame = +2
Query: 719 PXXXPPXPXSRPPQXXL------PXPPXAXCXXPXPP--PSXXPX*RXXLHXPPXPPPPP 874
P P P S PP + P PP A P P P+ P PP P P P
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Query: 875 XXPXLPXSSSP 907
P + P
Sbjct: 485 AAPVASIAELP 495
Score = 29.1 bits (62), Expect = 0.93
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 852 PPXPPPPPXXPXSPXPPXPSXPP 920
PP P PP P +P PS PP
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPP 437
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Frame = +3
Query: 849 PPPXPPPPPXXPXSP--XPPXPSXP 917
PPP PPP SP PP P P
Sbjct: 253 PPPIPPPSNGTVSSPPNSPPRPIAP 277
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.9 bits (74), Expect = 0.033
Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Frame = +2
Query: 731 PPXPXSRPPQXXLPXPPXAXCXXPXPPPS-XXPX*RXXLHXPPXPPPPPXXPXLPXSSS 904
PP P PP P P + P PPPS P PP P P P +P SS
Sbjct: 1189 PPVP---PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSS 1244
Score = 33.5 bits (73), Expect = 0.043
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +2
Query: 731 PPXPXSRPPQXXLPXPPXAXCXXPXPPPSXXPX*-RXXLHXPPXPPPPPXXPXLPXSSSP 907
PP P P P P A P PPPS P + + PP PPP P +P S+
Sbjct: 1169 PPVPA--PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP-STAPPVPTPSAG 1225
Query: 908 L 910
L
Sbjct: 1226 L 1226
Score = 29.9 bits (64), Expect = 0.53
Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Frame = +2
Query: 719 PXXXPPXPXSRPPQXXLPXPPXAXCXXPXPPPSXXPX*-RXXLHXPPXPPPPPXXPXLPX 895
P PP P P +P P P P PS P + + PP P P P +P
Sbjct: 1060 PSAPPPVPA---PSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPA 1116
Query: 896 SS 901
S
Sbjct: 1117 PS 1118
Score = 29.9 bits (64), Expect = 0.53
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = +2
Query: 734 PXPXSRPPQXXLPXPPXAXCXXPXPPPSXXPX*RXXLHXPPXPPPPPXXP 883
P P PP +P P A P P P + PP PPP P
Sbjct: 1153 PAPSGAPP---VPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Score = 29.1 bits (62), Expect = 0.93
Identities = 20/63 (31%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Frame = +2
Query: 719 PXXXPPXPXSRPPQXXLPXP-PXAXCXXPX-PPPSXXPX*RXXLHXPPXPPPPPXXPXLP 892
P PP P S P P P P P PS P PP P P P +P
Sbjct: 1046 PTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVP 1105
Query: 893 XSS 901
S
Sbjct: 1106 KPS 1108
Score = 29.1 bits (62), Expect = 0.93
Identities = 18/61 (29%), Positives = 21/61 (34%)
Frame = +2
Query: 719 PXXXPPXPXSRPPQXXLPXPPXAXCXXPXPPPSXXPX*RXXLHXPPXPPPPPXXPXLPXS 898
P PP P +P P P + P P PS P P P P P +P
Sbjct: 1088 PSGIPPVP--KPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKP 1145
Query: 899 S 901
S
Sbjct: 1146 S 1146
Score = 27.9 bits (59), Expect = 2.1
Identities = 20/63 (31%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Frame = +2
Query: 719 PXXXPPXPXSRPPQXXLPXPPXAXCXXPXPPPSXX-PX*RXXLHXPPXPPPPPXXPXLPX 895
P PP P +P P A P P PS P PP P P P +P
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAP---PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPA 1173
Query: 896 SSS 904
SS
Sbjct: 1174 PSS 1176
Score = 25.8 bits (54), Expect = 8.6
Identities = 17/59 (28%), Positives = 19/59 (32%)
Frame = +2
Query: 731 PPXPXSRPPQXXLPXPPXAXCXXPXPPPSXXPX*RXXLHXPPXPPPPPXXPXLPXSSSP 907
PP P +P P A P P P+ P P PPP P S P
Sbjct: 1022 PPVPLPSADAPPIPVPSTAP---PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIP 1077
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 33.5 bits (73), Expect = 0.043
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = +3
Query: 849 PPPXPPPPPXXPXSPXPPXPSXPP 920
PPP PPPP P S PP P PP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPP--PP 30
Score = 32.3 bits (70), Expect = 0.099
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +3
Query: 849 PPPXPPPPPXXPXSPXPPXPSXPP 920
PP PPPPP P P P PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +3
Query: 849 PPPXPPPPPXXPXSPXPPXPSXPP 920
P PPPPP P P PP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPP 29
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 31.1 bits (67), Expect = 0.23
Identities = 19/42 (45%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -1
Query: 919 GGXEGXGGX--GEXGXXGGGGGXGGGMXXGALXGXXGRGGAG 800
GG EG G G G GGG G GG G G G GG G
Sbjct: 231 GGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/41 (41%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = -1
Query: 919 GGXEGXGGXGEXGXXG-GGGGXGGGMXXGALXGXXGRGGAG 800
GG G G E G G GGG G G G G G G G
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 29.1 bits (62), Expect = 0.93
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = -1
Query: 916 GXEGXGGXGEXGXXGGGGGXGGGMXXGALXGXXG--RGGAG 800
G G GG G G GG GG GG + G G RGG G
Sbjct: 133 GPAGRGGRG--GFRGGRGGSRGGFGGNSRGGFGGGSRGGFG 171
Score = 29.1 bits (62), Expect = 0.93
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = -1
Query: 919 GGXEGX-GGXGEXGXXGGGGGXGGGMXXGALXGXXG--RGGA 803
GG G GG G G GGG GG G+ G G RGG+
Sbjct: 145 GGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGS 186
Score = 26.2 bits (55), Expect = 6.5
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = -1
Query: 919 GGXEGXGGXGEXGXXGG-GGGXGGGMXXGALXGXXG--RGGA 803
GG G G G G GG GG GG G+ G G RGG+
Sbjct: 138 GGRGGFRG-GRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGS 178
>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Frame = +1
Query: 151 LGSWPRTATPAWKCGSLPSARRSLLWP------PGHRVCSERKDAESVSSLP 288
L S+P AW+ LPS R+ L P P R+ ++K A +SS+P
Sbjct: 8 LRSFPSVQRTAWQRLVLPSTRKFSLTPTTFDKTPSGRIPPDQKAANIISSVP 59
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 344 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 448
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = -2
Query: 906 GEEEXGXXGXXGGGGGXGGXXRXXRXXGXXDGGG 805
G E G GGG G R R G +GGG
Sbjct: 73 GRREYNRGGHYGGGEGRQNNYRGGREGGYSNGGG 106
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 344 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 448
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 344 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 448
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -1
Query: 871 GGGGXGGGMXXGALXGXXGRGGAG 800
GGG GG G G GRGG G
Sbjct: 446 GGGSRGGRGGFGGRGGFGGRGGFG 469
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 4.9
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 225 MATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAI-AQAESLRYKL 401
MATR Q RR E + +QK +N + ++EL E+V G + + + RY +
Sbjct: 726 MATRIQRAWRSYVRRRSEAAACIQKLWNRNKVNMEL--ERVRNEGTKLLQGKKQRRRYSI 783
Query: 402 IG 407
+G
Sbjct: 784 LG 785
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.2 bits (55), Expect = 6.5
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3
Query: 849 PPPXPPPPP 875
PPP PPPPP
Sbjct: 306 PPPPPPPPP 314
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.2 bits (55), Expect = 6.5
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3
Query: 849 PPPXPPPPP 875
PPP PPPPP
Sbjct: 945 PPPPPPPPP 953
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 8.6
Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Frame = +2
Query: 752 PPQXXLPXPPX-AXCXXPXPPPSXXPX*RXXLHXPPXPPPPPXXPXLPXSSS 904
PP +P P + P PP P P PPP LP SS+
Sbjct: 1035 PPTVSVPSPSALSPSVTPQLPPVSSRLPPVSATRPQIPQPPPVSTALPSSSA 1086
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,147,810
Number of Sequences: 5004
Number of extensions: 61963
Number of successful extensions: 523
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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