Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_H24
         (925 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.73 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.97 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   2.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.8  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.73
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 852 PPXPPPPPXXPXSPXP 899
           PP P PPP  P S  P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 24.2 bits (50), Expect = 1.7
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 849 PPPXPPPPPXXPXSP 893
           P P PPPPP     P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 854 PXPPPPPXXPXLPXSS 901
           P PPPPP     P S+
Sbjct: 341 PAPPPPPPSSSGPDSA 356


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.97
 Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
 Frame = +2

Query: 779 PXAXCXXPXPPPSXXPX*RXXLHXPPXP---PPPPXXPXLPXSSSP 907
           P +    P P P   P        PP P   PPP   P  P S +P
Sbjct: 16  PSSGAPGPQPSPHQSPQ-APQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +3

Query: 849 PPPXPPPPPXXPXSPXPPXPSXPP 920
           P P P   P  P    PP PS  P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGP 46



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +3

Query: 855 PXPPPPPXXPXSPXPPXPSXP 917
           P PP P     S  PP P+ P
Sbjct: 416 PMPPIPNMSNMSGMPPLPNMP 436


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = -3

Query: 551  VDHESMXKLH*XGTLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSD 402
            VD   + K     T+ T L +Y N+T     F    +    + TY +T +
Sbjct: 1162 VDEMEVRKTSALTTVLTGLRKYTNYTIQVLAFTRVGDGVPTTVTYCQTEE 1211


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = -3

Query: 551  VDHESMXKLH*XGTLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSD 402
            VD   + K     T+ T L +Y N+T     F    +    + TY +T +
Sbjct: 1158 VDEMEVRKTSALTTVLTGLRKYTNYTIQVLAFTRVGDGVPTTVTYCQTEE 1207


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 849  PPPXPPPP 872
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 852  PPXPPPPP 875
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 218 DLRADGSDPHFH 183
           ++  DGS PHFH
Sbjct: 621 EISQDGSSPHFH 632


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 233  QDTECARRERTQ 268
            QD +C R+ERTQ
Sbjct: 1646 QDHDCIRQERTQ 1657


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,652
Number of Sequences: 438
Number of extensions: 5856
Number of successful extensions: 30
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)