Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_H20
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    28   1.5  
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    27   3.4  
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce...    26   7.8  
SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c...    26   7.8  

>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +1

Query: 19  TIGNSLRFLIFFXISAAMSFSWIVVLAFVNIIVLCTADLCS 141
           ++  +L + I +  +  + + W++ + F+  I L  A+LCS
Sbjct: 78  SVATTLPYSIGYTGTPGLLWGWLIAMVFIICIALSMAELCS 118


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +1

Query: 256 CLCKEGYLKDDSGKCVARENCPNSDLCSENEIYVKCVQAQC 378
           C+         +G C+ +E CP  DL  + E  V  ++ +C
Sbjct: 194 CVTLTSVFNKSAGFCLVQEYCPQGDLFKQIEEKVLTLEDKC 234


>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 544

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 67  AMSFSWIVVLAFVNIIVLCTADLCS 141
           AM + W++ + FV  +    A+LCS
Sbjct: 75  AMVWGWLIAMVFVQCVANGMAELCS 99


>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 154

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 118 LCTADLCSENEIYVKCVQAHCGPRTCSEKDLPMPCPLVRQEYCK 249
           + T  +C+E+EI  KC      P+ CS     +PC  + Q  C+
Sbjct: 1   MTTCSICNESEIKYKC------PK-CSFPYCSLPCWKIHQSQCE 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,978,227
Number of Sequences: 5004
Number of extensions: 55614
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)