Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_H20
         (852 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0037 - 17452503-17452523,17452594-17452689,17453315-174534...    33   0.38 
06_02_0361 - 15168735-15168754,15168783-15169248                       29   3.6  
05_04_0123 + 18210069-18213737                                         29   4.7  
10_08_0272 - 16387422-16387427,16387428-16387526,16387688-163881...    28   8.2  

>01_05_0037 -
           17452503-17452523,17452594-17452689,17453315-17453419,
           17453699-17453869,17454309-17454378,17454698-17454879,
           17457297-17457406,17458353-17458457,17458537-17458615,
           17458722-17458762,17459019-17459097,17460620-17460814
          Length = 417

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -3

Query: 340 QSRGQNLGSFLGRHIYRYRLSDIPLYTGIRLCSTLASPMG--RA*VSPSLSTSLGRNVLG 167
           QS   NLG   GRH+    + + P Y  ++ C  L + +G   A +   L T+L  N+L 
Sbjct: 121 QSLAANLGIITGRHLAELCMGEYPKY--VKYCLWLLAELGVIAATIPGVLGTALAYNMLL 178

Query: 166 HI 161
           HI
Sbjct: 179 HI 180


>06_02_0361 - 15168735-15168754,15168783-15169248
          Length = 161

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
 Frame = +1

Query: 211 PMPCPLVRQEYCKAGCLCKEGYLKD---DSGKCVARENCPNSDLCSENEIYV-KCVQAQC 378
           P PCP   Q+     C     +L D   +  K  A +N   S L  EN+ +  +    + 
Sbjct: 44  PEPCPSCHQDVVLDSCQETTSFLHDASLEKEKLQAMDNLETSTLEDENDTFEHESFSFKF 103

Query: 379 SPMTCSKXDGPKICPLVXEKSCK 447
              +CS  +  + CP      C+
Sbjct: 104 PQESCSHKESSEFCPNSITSLCE 126


>05_04_0123 + 18210069-18213737
          Length = 1222

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 580 GXHXAWTPXXYISFSDQRSXLGSFFGRHIYRYXLSDI 470
           G H  W    + SF      +GS F R +YRY  SD+
Sbjct: 455 GNHVFWE-LVWRSFFQNVKQIGSIFQRKVYRYGQSDV 490


>10_08_0272 -
           16387422-16387427,16387428-16387526,16387688-16388122,
           16388408-16388738,16390821-16390961,16391668-16391736,
           16392077-16392312
          Length = 438

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = -1

Query: 288 IVFQISLFTQASGFAVLLPHQWAGHR*VLL*ARPWAAMCLDTFHVYFIFRAEVSCTEDDD 109
           +V  + LF +       LP  WA H  V   +  W  +  D+ H Y +F       E+DD
Sbjct: 225 VVQMLDLFNKNKSLMPDLPGPWAPHWPVSAASDIWVTITGDSSH-YILFYGRAVYVEEDD 283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,583,489
Number of Sequences: 37544
Number of extensions: 413837
Number of successful extensions: 833
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)