Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_H18
(920 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 2.1
SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosacc... 27 3.7
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 6.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 8.6
SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces... 26 8.6
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/76 (23%), Positives = 22/76 (28%), Gaps = 1/76 (1%)
Frame = +3
Query: 696 PAXXXPPTAKXRXXPPVAXXPITLHXXPT-IRXXQAXPSPLGXNPTFTPXAPGDPPQXXV 872
P+ PP PPV + P P P P P + P
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPS 1204
Query: 873 IEXPXPTPPXXAXXVP 920
+ P PP A VP
Sbjct: 1205 VGVPPVPPPSTAPPVP 1220
Score = 27.5 bits (58), Expect = 2.8
Identities = 19/74 (25%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Frame = +3
Query: 678 PGVTXTPAXXXPPTAKXRXXPPVAXXPITLHXXPTIRXXQAXPSPLGXNPTFTPXAPGDP 857
P T TP + PPV + P P+P G P P P
Sbjct: 1044 PIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPP 1103
Query: 858 -PQXXVIEXPXPTP 896
P+ V P P P
Sbjct: 1104 VPKPSVAVPPVPAP 1117
Score = 27.1 bits (57), Expect = 3.7
Identities = 19/76 (25%), Positives = 22/76 (28%), Gaps = 1/76 (1%)
Frame = +3
Query: 696 PAXXXPPTAKXRXXPPVAXXPITLHXXPTIRXXQAXPSPLGXNPTFTPXAPGDPP-QXXV 872
P+ PP PPV + P P P P + G PP
Sbjct: 1126 PSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPA 1185
Query: 873 IEXPXPTPPXXAXXVP 920
P PP A VP
Sbjct: 1186 AGVPPVPPPSEAPPVP 1201
Score = 27.1 bits (57), Expect = 3.7
Identities = 19/76 (25%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
Frame = +3
Query: 696 PAXXXPPTAKXRXXPPVAXXPITLHXXPTIRXXQAXPSP-LGXNPTFTPXAPGDPPQXXV 872
PA PP PPV + + P P+P G P P A P
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243
Query: 873 IEXPXPTPPXXAXXVP 920
E P + P + P
Sbjct: 1244 SEAPSVSTPRSSVPSP 1259
Score = 26.2 bits (55), Expect = 6.5
Identities = 19/70 (27%), Positives = 24/70 (34%)
Frame = +3
Query: 711 PPTAKXRXXPPVAXXPITLHXXPTIRXXQAXPSPLGXNPTFTPXAPGDPPQXXVIEXPXP 890
PP K P A P+ P+ + P+P G P P P+ V P P
Sbjct: 1050 PPVPKSSSGAPSAPPPVPA---PSSEIP-SIPAPSGAPPVPAPSGIPPVPKPSVAAPPVP 1105
Query: 891 TPPXXAXXVP 920
P VP
Sbjct: 1106 KPSVAVPPVP 1115
Score = 25.8 bits (54), Expect = 8.6
Identities = 24/83 (28%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Frame = +3
Query: 675 PPGVTXTPAXXX-PPTAKXRXXPPVAXXPITLHXXPTIRXXQAXPSPLGXNPTFTPXAPG 851
P G PA PP K P VA P+ P++ P+P G P P
Sbjct: 1079 PSGAPPVPAPSGIPPVPK----PSVAAPPVP---KPSVAVPPV-PAPSGAPPVPKPSVAA 1130
Query: 852 DPPQXXVIEXPXPTPPXXAXXVP 920
P P P P A VP
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVP 1153
>SPCC1919.09 |tif6||translation initiation factor
eIF6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 432 TXIWGHQKTGLTILNHRKGLVVPTXTTD 515
T I G + G +RKGL+VP+ TTD
Sbjct: 51 TTIGGTRIIGRLTCGNRKGLLVPSSTTD 78
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.2 bits (55), Expect = 6.5
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -3
Query: 228 HCAAKNVVRACWKTGPATW*LLTIVVVNAGSHAQNI 121
HC A N ++ W+ W T ++ G H NI
Sbjct: 1673 HCNAFNFAKSHWEPVIEPWTFSTTAIMKDGMHEVNI 1708
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 6.5
Identities = 15/70 (21%), Positives = 20/70 (28%)
Frame = +3
Query: 711 PPTAKXRXXPPVAXXPITLHXXPTIRXXQAXPSPLGXNPTFTPXAPGDPPQXXVIEXPXP 890
PP PP A + P++ PL + P P P + P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
Query: 891 TPPXXAXXVP 920
PP P
Sbjct: 475 APPPAPAPAP 484
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 8.6
Identities = 22/78 (28%), Positives = 27/78 (34%), Gaps = 4/78 (5%)
Frame = +3
Query: 678 PG-VTXTPAXXX---PPTAKXRXXPPVAXXPITLHXXPTIRXXQAXPSPLGXNPTFTPXA 845
PG VT PA PP + P V P+ P++ A P P P +
Sbjct: 1463 PGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPV-----PSMIPSVAQQPPSSVAPATAPSS 1517
Query: 846 PGDPPQXXVIEXPXPTPP 899
P Q P P PP
Sbjct: 1518 TLPPSQSSFAHVPSPAPP 1535
>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 234 IAHCAAKNVVRACWKTGPATW 172
IAHC+A+ V + + G ATW
Sbjct: 202 IAHCSAQGKVGSGFDVGAATW 222
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,921,042
Number of Sequences: 5004
Number of extensions: 50432
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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