Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_H17
         (883 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443     30   2.1  
01_04_0029 - 15240827-15241290,15241925-15241973,15242056-15242205     30   2.1  
01_04_0021 - 15151645-15151809,15152184-15152343,15152548-151530...    30   2.8  
01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319     29   4.9  
01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110     29   6.5  
03_01_0249 - 1935355-1935827,1936129-1936330                           28   8.6  

>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
          Length = 221

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -2

Query: 633 PFGQMPVLVXXGXXYXXXTAICRYLGRKYGXAGAN 529
           PFGQ+PVL           AI RY+  KY   GA+
Sbjct: 55  PFGQIPVLQDGDEVLYESRAINRYIATKYKAEGAD 89


>01_04_0029 - 15240827-15241290,15241925-15241973,15242056-15242205
          Length = 220

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 642 QRPPFGQMPVLVXXGXXYXXXTAICRYLGRKYGXAGAN 529
           +R PFGQMP             A+ RY+ RKY  + AN
Sbjct: 48  KRNPFGQMPAFQDGDLLLFESRAVGRYILRKYKTSEAN 85


>01_04_0021 -
           15151645-15151809,15152184-15152343,15152548-15153025,
           15153243-15153291,15153585-15153734
          Length = 333

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 639 RPPFGQMPVLVXXGXXYXXXTAICRYLGRKY 547
           R PFG++PVL           AI RY+ RKY
Sbjct: 49  RNPFGEIPVLEDGDLTLYQSRAIARYIFRKY 79


>01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319
          Length = 221

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 639 RPPFGQMPVLVXXGXXYXXXTAICRYLGRKY 547
           R PFGQ+P             AICRY+ RK+
Sbjct: 49  RNPFGQVPAFQDGDLMLFESRAICRYILRKH 79


>01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110
          Length = 215

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 639 RPPFGQMPVLVXXGXXYXXXTAICRYLGRK 550
           R PFGQ+P L           AIC+Y+ RK
Sbjct: 49  RNPFGQVPALQDGDLFLWESRAICKYVCRK 78


>03_01_0249 - 1935355-1935827,1936129-1936330
          Length = 224

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -2

Query: 633 PFGQMPVLVXXGXXYXXXTAICRYLGRKYGXAGANXEXAFEXDXNVG 493
           PFGQ+P             AICRY+  +Y  +G       + D  VG
Sbjct: 52  PFGQVPAFKDSLTTVFESRAICRYICDQYADSGNKTLMGRKEDGAVG 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,572,991
Number of Sequences: 37544
Number of extensions: 148115
Number of successful extensions: 264
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)