Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_H15
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...   208   1e-54
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    29   0.86 
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...    27   3.5  
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi...    27   3.5  
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces...    27   4.6  
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...    27   4.6  
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...    27   4.6  

>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score =  208 bits (507), Expect = 1e-54
 Identities = 97/191 (50%), Positives = 122/191 (63%)
 Frame = +3

Query: 279 HPPHNPWNHSGWFSSLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEA 458
           H   + W  S   S  DHAS+RRG++VY++VC ACHSL  IA+R+LV VTHT DEAK  A
Sbjct: 71  HFIQHDWPQSKVLSGFDHASLRRGFQVYREVCSACHSLNLIAWRHLVGVTHTADEAKQMA 130

Query: 459 AEVMIKDGPDEEGXYFERPGKLSDYLPSXXXXXXXXXXXXXXXXXXDLSLICSGRKGGED 638
           +EV  +DGPD+EG  F+RPGKLSD+LP                   DLS +  GR GG+D
Sbjct: 131 SEVEYEDGPDDEGNMFKRPGKLSDFLPPPYPNVEAARASNNGAAPPDLSCVVRGRHGGQD 190

Query: 639 YIFALLTGYMEPPAGVXLXEGXNYNPYFPXXAISMAQVLFDXXXXYXDXXPAXXSXLAKD 818
           YI++LLTGY EPPAGV + +G N+NP+FP   I+MA+ LFD    + D  PA  +  AKD
Sbjct: 191 YIYSLLTGYTEPPAGVEVPDGMNFNPFFPGTQIAMARPLFDDAVEFEDGTPATTAQAAKD 250

Query: 819 VATFLKWCSXP 851
           V  FL W S P
Sbjct: 251 VVNFLHWASEP 261


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 225 QHLHLPLPKWTATLFCFLSILECWWTADKPEA 130
           +H ++PLPK  A +FC    L C++T    E+
Sbjct: 822 KHQNIPLPKTCAAIFCGNDELVCFFTIKADES 853


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -3

Query: 200 SGQPHFSVFCPSLSVGGQLTSLRPN*TIFFQKTCPTNPTDGGRHV*KPS 54
           +GQ    V C  L++ G     +     + +K C  NP+ G  H   PS
Sbjct: 30  AGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPS 78


>SPBC1539.01c |||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +2

Query: 101 TSFEKIWSSLASGLSAV 151
           +SFEKI+SS+ SGL AV
Sbjct: 159 SSFEKIYSSIVSGLVAV 175


>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
 Frame = +3

Query: 621 RKGGEDY-IFALLTGYMEPPAGVXLXEGXNYNPYFPXXAISMAQVLF 758
           R  G  Y + A L   + PP G  +    +Y PYF          +F
Sbjct: 197 RNNGPSYSLLASLASQLPPPYGAMIRHTTSYVPYFTQLITDACMTIF 243


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -3

Query: 197 GQPHFSVFCPSLSVGGQLTSLRPN*TIFFQKTCPTNPTDGGRHV*KPS 54
           GQ    V C  L++ G     +     + +K C  NP+ G  H   PS
Sbjct: 31  GQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPS 78


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -3

Query: 197 GQPHFSVFCPSLSVGGQLTSLRPN*TIFFQKTCPTNPTDGGRHV*KPS 54
           GQ    V C  L++ G     +     + +K C  NP+ G  H   PS
Sbjct: 31  GQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPS 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,370,510
Number of Sequences: 5004
Number of extensions: 62845
Number of successful extensions: 178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)