Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_H15
(871 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0389 - 13409848-13409964,13410049-13410114,13410209-134103... 205 3e-53
01_07_0097 + 41070877-41070942,41071039-41071104,41071189-41071305 35 0.074
10_08_0870 - 21178136-21178534 30 2.1
09_02_0327 - 7284829-7284889,7284946-7286126 30 2.1
09_02_0121 + 4502628-4502696,4503727-4503829,4504205-4504328,450... 30 2.1
10_01_0034 - 414654-415649,416654-417007 30 2.8
06_01_0275 + 2029542-2029689,2029777-2030295,2030657-2030754,203... 28 8.5
04_03_0129 - 11554917-11555033,11555470-11555613,11555807-115559... 28 8.5
>05_03_0389 - 13409848-13409964,13410049-13410114,13410209-13410325,
13410822-13410893,13410979-13411258,13411528-13411730,
13412230-13412316,13412705-13412758,13413042-13413221,
13414402-13414576,13414628-13414918,13414923-13415344
Length = 687
Score = 205 bits (501), Expect = 3e-53
Identities = 92/186 (49%), Positives = 120/186 (64%)
Frame = +3
Query: 294 PWNHSGWFSSLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEAAEVMI 473
PW H+G SS DHAS+RRG++VY QVC +CHS+ I++R+LV V +TE+E KA AAE+ +
Sbjct: 457 PWPHAGILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEV 516
Query: 474 KDGPDEEGXYFERPGKLSDYLPSXXXXXXXXXXXXXXXXXXDLSLICSGRKGGEDYIFAL 653
DGP++EG F RPGKLSD P DLSLI R G++Y+FAL
Sbjct: 517 VDGPNDEGEMFTRPGKLSDRFPQPYPNEQAARFANGGAYPPDLSLITKARHNGQNYVFAL 576
Query: 654 LTGYMEPPAGVXLXEGXNYNPYFPXXAISMAQVLFDXXXXYXDXXPAXXSXLAKDVATFL 833
LTGY +PPAGV + EG +YNPYFP AI+M ++L D Y D PA + + KDV +FL
Sbjct: 577 LTGYRDPPAGVQIREGLHYNPYFPGGAIAMPKMLIDGAVEYEDGTPATEAQMGKDVVSFL 636
Query: 834 KWCSXP 851
W + P
Sbjct: 637 SWAAEP 642
>01_07_0097 + 41070877-41070942,41071039-41071104,41071189-41071305
Length = 82
Score = 35.1 bits (77), Expect = 0.074
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 741 MAQVLFDXXXXYXDXXPAXXSXLAKDVATFLKWCSXP 851
M ++L D Y D PA + + KDV +FL W + P
Sbjct: 1 MPKMLIDGAVEYEDGTPATEAQMGKDVVSFLSWAAEP 37
>10_08_0870 - 21178136-21178534
Length = 132
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 262 ACTDCSSAKSRAPTPPPTTP 203
AC DC S K AP P P TP
Sbjct: 21 ACPDCPSPKPPAPRPKPPTP 40
>09_02_0327 - 7284829-7284889,7284946-7286126
Length = 413
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 247 SSAKSRAPTPPPTTPKVDSHTFLFFV 170
+S SR P PPP P + H FLF +
Sbjct: 138 ASGDSRNPPPPPRRPAIVLHAFLFLL 163
>09_02_0121 +
4502628-4502696,4503727-4503829,4504205-4504328,
4505963-4506306,4506383-4506487,4507907-4508288,
4509173-4509437,4509936-4510094,4511150-4511201,
4511266-4511462,4512865-4513350,4513797-4514093
Length = 860
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 270 SLMPAQTAQVQKVELQHLHLPLPKWTATLFCFLSILECWWT 148
S+MP QT Q+ LQ L+LP FLS+ W+
Sbjct: 506 SVMPTQTGHAQEARLQQLNLPHAMEILIAVSFLSLFLVIWS 546
>10_01_0034 - 414654-415649,416654-417007
Length = 449
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/65 (27%), Positives = 34/65 (52%)
Frame = +3
Query: 9 QLPFXYYGNSLRF*LRRFSNMAATVGRICGARLLKKYGLVWPQACQLSTNTQGWTKNRKV 188
++P YYGN+L + + AAT G +CG L + L+ + +L T+ ++
Sbjct: 284 RIPEGYYGNALTYHVA-----AATAGELCGTTLARTVALI--REAKLDGTTEERVRSTVA 336
Query: 189 WLSTL 203
+L++L
Sbjct: 337 FLASL 341
>06_01_0275 +
2029542-2029689,2029777-2030295,2030657-2030754,
2031718-2032028,2032560-2032631,2032729-2033398
Length = 605
Score = 28.3 bits (60), Expect = 8.5
Identities = 24/87 (27%), Positives = 37/87 (42%)
Frame = +3
Query: 258 QASGSEAHPPHNPWNHSGWFSSLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTE 437
++ + AHP H P+ SGW S D + E KQ + + ++ ++
Sbjct: 70 ESDPATAHPQHLPFEPSGWDS--DPPQLPPEQEQQKQKPQPAEKPRK-SWADMAQEDELA 126
Query: 438 DEAKAEAAEVMIKDGPDEEGXYFERPG 518
A+ +AA DG EEG RPG
Sbjct: 127 AAAEEDAAAAAADDG--EEGSEAGRPG 151
>04_03_0129 -
11554917-11555033,11555470-11555613,11555807-11555999,
11556083-11556139,11556300-11556403,11556882-11556953,
11557069-11557187,11557639-11557783,11558527-11558672,
11558758-11558827,11559000-11559056,11559081-11559228,
11559311-11559432,11559649-11559845,11560296-11560350,
11560468-11560680,11561239-11561386,11561515-11561585,
11563286-11563316,11563532-11563623,11565621-11565688,
11567895-11568069
Length = 847
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 277 LTHLTTLGITVAGSAPWTTLVSVGVMKFTNKSAR 378
L +L++ I VAG++ WT L V K TN+++R
Sbjct: 382 LQNLSSATIQVAGTSNWTKLEQKLVAKGTNRTSR 415
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,798,295
Number of Sequences: 37544
Number of extensions: 477626
Number of successful extensions: 1759
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1750
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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