Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_H13
         (916 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    29   3.5  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   6.1  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   6.1  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   6.1  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    28   8.1  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    28   8.1  

>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/39 (33%), Positives = 13/39 (33%)
 Frame = +1

Query: 550 PPXPFXXXLPXGXAQXXXXXPKXXXPPPPPXVPXGXFXP 666
           PP P    L           P    PPPPP  P G   P
Sbjct: 564 PPPPLPQNLSGAPPPPPPPPPMLGGPPPPPPPPGGLMGP 602


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +1

Query: 550 PPXPFXXXLPXGXAQXXXXXPKXXXPPPPPXVPXGXF 660
           PP P     P          P    PPPPP  P G F
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF 780


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +1

Query: 550 PPXPFXXXLPXGXAQXXXXXPKXXXPPPPPXVPXGXF 660
           PP P     P          P    PPPPP  P G F
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF 780


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +1

Query: 550 PPXPFXXXLPXGXAQXXXXXPKXXXPPPPPXVPXGXF 660
           PP P     P          P    PPPPP  P G F
Sbjct: 327 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF 363


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 164   TNAKTKLKIRTKFILPKFYSAGEFKIPNTISFDANAKNDQXLRK 33
             T+A  ++K + KFI+      GEF    +I+FD N    +  R+
Sbjct: 12112 TSAPGEVKKKKKFIISAISQDGEFSDAESITFDENGVRVEKRRR 12155


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 164   TNAKTKLKIRTKFILPKFYSAGEFKIPNTISFDANAKNDQXLRK 33
             T+A  ++K + KFI+      GEF    +I+FD N    +  R+
Sbjct: 12112 TSAPGEVKKKKKFIISAISQDGEFSDAESITFDENGVRVEKRRR 12155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,454,857
Number of Sequences: 27780
Number of extensions: 170267
Number of successful extensions: 669
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)