Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_H12
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    29   0.90 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.4  
SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr 1...    26   6.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.4  
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    26   8.4  

>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = -1

Query: 143  LHQISRSYLPYLQSITEFNRQFVMKTIWNGPISK 42
            LH+I RS+L +L SI    +Q V++ +WN  I K
Sbjct: 1184 LHKI-RSFLVHLLSINSHGKQSVVEDLWNPLILK 1216


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 521 PPPPXPXXXPXXXPPXP 571
           PPPP P   P   PP P
Sbjct: 11  PPPPPPGFEPPSQPPPP 27


>SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 248 VFDTALQRFLSMKVT-QFEYFTVNKRTSLFGFFVIVVPMFTFGTLIW 385
           V  T+ +   S+K++ + +YF V    S FGFF+ VV    F  ++W
Sbjct: 172 VLYTSKRIIKSLKLSDRSDYFLV---VSGFGFFIFVVVYLLFKRIVW 215


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 3/65 (4%)
 Frame = +1

Query: 463 ITDELVHNRKYIVNXMXXXPPX---PXPXXXPXXXXPPXXXXXXXXXPXXXXXPPXGGXP 633
           ++D +   +K ++      PP    P P   P    PP         P         G P
Sbjct: 717 VSDTVEEQQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776

Query: 634 XPPXP 648
            PP P
Sbjct: 777 PPPPP 781


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +2

Query: 173 RRAEMRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKV 289
           +RAEMRRE  + R    K   EAG V  +  +R    KV
Sbjct: 52  KRAEMRREKKRLRKEERKRKIEAGEVVKSQKKRIRLGKV 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,305
Number of Sequences: 5004
Number of extensions: 51450
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)